Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000021.1:2627108-2630081[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00046 0.013 16.5 4.7 2 23 198 219 197 219 0.97

2 11 9.3e-05 0.0026 18.7 0.5 3 23 229 249 227 249 0.96

3 11 0.026 0.72 11.0 2.3 1 23 255 277 255 278 0.95

4 11 2.5e-05 0.0007 20.5 1.2 2 23 284 305 283 305 0.97

5 11 0.0027 0.075 14.1 1.8 1 23 309 331 309 331 0.97

6 11 0.00016 0.0044 18.0 4.2 1 23 336 359 336 359 0.97

7 11 0.0002 0.0054 17.7 1.2 1 23 392 414 392 414 0.97

8 11 0.00027 0.0075 17.2 0.3 3 23 425 445 424 445 0.99

9 11 1.5e-07 4.1e-06 27.5 2.0 1 23 451 473 451 473 0.99

10 11 0.073 2 9.6 7.4 1 23 479 501 479 501 0.96

11 11 9.6e-06 0.00026 21.8 2.7 1 23 507 530 507 530 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00046	0.013	16.5	4.7	2	23	198	219	197	219	0.97
2	11	9.3e-05	0.0026	18.7	0.5	3	23	229	249	227	249	0.96
3	11	0.026	0.72	11.0	2.3	1	23	255	277	255	278	0.95
4	11	2.5e-05	0.0007	20.5	1.2	2	23	284	305	283	305	0.97
5	11	0.0027	0.075	14.1	1.8	1	23	309	331	309	331	0.97
6	11	0.00016	0.0044	18.0	4.2	1	23	336	359	336	359	0.97
7	11	0.0002	0.0054	17.7	1.2	1	23	392	414	392	414	0.97
8	11	0.00027	0.0075	17.2	0.3	3	23	425	445	424	445	0.99
9	11	1.5e-07	4.1e-06	27.5	2.0	1	23	451	473	451	473	0.99
10	11	0.073	2	9.6	7.4	1	23	479	501	479	501	0.96
11	11	9.6e-06	0.00026	21.8	2.7	1	23	507	530	507	530	0.94

Sequence Information

Coding Sequence: ATGGCAAAGAGGgcagatttttcaaaaatgtgccGAACTTGCTTACTGCTGACCAATGAAACCACCTGTGtgttttctcaaaatatttttgaaatgataaaaGCGTGTACAAACATTAAGataagtGAATTAGACGGTTTGCCATCGAAAATTTGcacaaaatgtataaaaaacgtcaAAATCTCGTTCAACTTCAAAAACCAAGTCGAAAAATGTGATAAATTGTTACGTAAAATCGTTCAAGACGAGGTACAATTAGAAAAAGAACAATTCGAATCGATCGTCATAAAATCCGAAATCGATTCGAACAACGCTTCGCAGGGAACAAACGAAgacaaaaaaacagttgaaaacgaTGTTAAACAAGAGCCAGTCGCTGcagaaaataatttgacagtgtTTCCCTCGAACGATCGTCTTCAAACGTCAAACTCGTACGAATTTGAAGACAGTTTCGCCGAAGAGTTCACGTCAAAGAACAGCGATGACGAACTATCCGACTTCGACGATACTGCTTCGAAGAAGAAACCCGAACAAAAAAACGTTATCAATGACGACGATGACCCATTTATGCCGCTCAAAAACGAATGGAAATGCGAAGTATGCGGCAAACAATTGTGCCACAAGAATTCGATGGAACGTCACATGAAAACACATCCGAATTATCGTACTGAGTTCATCAACTGTTCGATTTGCGGAAAACAGTTTTACGACAAAATGTATTTAGATTCTCACATGTTAAGGCATACGAAAAACACCAAATACAATTGCGAGCATTGCGAAAAGAGTTTTTATGCCTTGACGCCCTTGGCTTACCATATTGAGAAGCATCACCATTACGAACCGGTCGAGTGCAAAGAATGCAAGAAAAAATTCACTTTACAGCTGCAGCTTAACAGGCACATGGCGACACACAGAAAGGAATTCATTTGCAATATTTGCGGGAAGCAGGCGAAGTCTTTGAAAGCTCTCTGCTCGCACAGAACGACGCATAACACAGATCCGTTCCCTTGTTCGAAATGCGAACggaaattcaaatataagtctCATCTTTACCAACACGTAAAGAGTGCCCATATGGGCATTAAAAAGGGGAGACACGTTTGCACGATATGCGGAAACGAGGTGGTAAACCTTAAGCATCACATGATACGACACGCGACAGAAAAACCGTTCAAATGCGAACGTTGCGATAAATCGTTTGCAAAAGAGTGGGCGCTGAAGCAGCACAGCAAAAACCACACcggttttttggaaaaatacagAGTGCTCTGCACGGTATGCGGCAAAAAGATTGTCAACAGTACCGCGTTACGGTACCACATGCGTATCCACACAGGCGAGGAACCATTCAAGTGCACGATATGCGATAAAACGTTTAAAAGAAACAGTACTTTGTTGGCGCACAAACGTATCCATACTGGGGAGAGACTACATGAATGCATGGAATGTCATAAAGATTTCGCGACAAAACACTGTCTCGAACTTCATAAACTTATACACACCGGGGAACGACCTCACGAGTGTAATTTTTGCGGGCGAAGATTTACGCAGAAATCGGCTTTGAAAACGCACATCACAAATTTGCATAAAAGCAATTAG
Protein Sequence: MAKRADFSKMCRTCLLLTNETTCVFSQNIFEMIKACTNIKISELDGLPSKICTKCIKNVKISFNFKNQVEKCDKLLRKIVQDEVQLEKEQFESIVIKSEIDSNNASQGTNEDKKTVENDVKQEPVAAENNLTVFPSNDRLQTSNSYEFEDSFAEEFTSKNSDDELSDFDDTASKKKPEQKNVINDDDDPFMPLKNEWKCEVCGKQLCHKNSMERHMKTHPNYRTEFINCSICGKQFYDKMYLDSHMLRHTKNTKYNCEHCEKSFYALTPLAYHIEKHHHYEPVECKECKKKFTLQLQLNRHMATHRKEFICNICGKQAKSLKALCSHRTTHNTDPFPCSKCERKFKYKSHLYQHVKSAHMGIKKGRHVCTICGNEVVNLKHHMIRHATEKPFKCERCDKSFAKEWALKQHSKNHTGFLEKYRVLCTVCGKKIVNSTALRYHMRIHTGEEPFKCTICDKTFKRNSTLLAHKRIHTGERLHECMECHKDFATKHCLELHKLIHTGERPHECNFCGRRFTQKSALKTHITNLHKSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01531004;
90% Identity: iTF_01531004;
80% Identity: -