Vnig013124.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
pita
Assembly
GCA_034508555.1
Location
JAVRKA010000037.1:4683084-4686811[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.098 2.7 9.2 1.1 3 23 293 314 291 314 0.93
2 20 0.0066 0.18 12.9 1.1 1 23 319 342 319 342 0.96
3 20 0.11 3 9.0 2.5 1 21 457 477 457 478 0.95
4 20 7.3 2e+02 3.3 2.4 3 23 634 655 634 655 0.91
5 20 3.4 93 4.3 4.9 3 23 721 742 719 742 0.94
6 20 4.5e-05 0.0012 19.7 0.3 3 23 749 769 748 769 0.96
7 20 0.21 5.8 8.1 0.0 2 20 775 793 774 795 0.93
8 20 6.2e-05 0.0017 19.2 1.7 1 23 801 823 801 823 0.98
9 20 0.0065 0.18 12.9 1.6 1 23 834 857 834 857 0.96
10 20 0.0019 0.052 14.6 0.7 1 23 873 895 873 895 0.98
11 20 0.0026 0.07 14.2 0.3 2 19 900 917 899 919 0.95
12 20 0.021 0.57 11.3 0.7 1 23 927 949 927 949 0.96
13 20 0.0037 0.1 13.7 9.7 1 23 953 975 953 975 0.98
14 20 1.5 42 5.4 4.6 1 23 981 1004 981 1004 0.95
15 20 0.083 2.3 9.4 0.1 1 15 1017 1031 1017 1034 0.85
16 20 0.0001 0.0028 18.6 1.8 1 23 1045 1068 1045 1068 0.97
17 20 0.0071 0.2 12.8 4.7 1 23 1081 1103 1081 1103 0.99
18 20 4.3e-05 0.0012 19.7 3.3 1 23 1109 1131 1109 1131 0.97
19 20 2.5e-05 0.00068 20.5 3.2 1 23 1137 1159 1137 1159 0.97
20 20 0.26 7.1 7.9 7.5 1 23 1164 1186 1164 1186 0.98

Sequence Information

Coding Sequence
atgcaGGTGTTAAAAAAATCCGTTTGTCGTACTTGCTTATCAGAAAGAAAATTGCAATcagtttttagtaaaataaagcCAGAAGAAGTTATAACATATTCTGAAATTTTACTACGAGGTGCTTTCGTACAGATTTCAGAAGGCGATGACATGCCATTGCAAATCTGCGAAACGTGCCGAGATCATTtgaatcaaatatatttattcaaaCAGCAGTGCGAAAAAGCCGATTTCATTCTGCGTATGCAAATCAAGAAAGATATTGAAACGGATCCATTGGAATTGCCTGTTGTAAAAAGTCGAATACACAATGCAACAAGATTGCAGAGCGGTGCTAAAAACTCGTTACGTGAAGTTGAAAATAGTGCAGCAAATTCTTCTGATGATACAGAcgttcaacaaaataaaaatcttaacaCTTATGAAAGACGGAAGAGTGCAATCGATTTGATAAAACGAAACTCCGATTTAACGAAGAGCTTTATCACGCCattttcagattgtaaaaacgATTATACCGATTTGGCATCGgatttatttagtaaaaaagtgCCTTTAACTCGTTTAGGTGTTGTAAAAGTGACGAACAAACAAAATAGTTCTATTCTAGTCAGTTGCAGAATGTGTAAAAAATCTTATATCTCGGGAAGTTTTTCACAGCATTGGACTGCAAATCATGAAAAGAAATCGGAAAGTAGTGGCGTCGAAAATACTGAAACTAATTTGGTTATCGCGAAATCGTCCAGAAAGGAGAAATTACCTTTATCTAGTAACAATCAGTTACCTTCTAGTAAGGAAAATGGTGACAGCAATgcgttaaaagaaaaaataaatgacgaTCATTACTATGGTCGTCAAACAAGTGAAGGgattatttgtttgaaatgtaACAAACTGTTTCGATCATTTAAAGCATTTGAGAAACATTTGTTTGTTAATCATGCTAAAACGAAATATAGTTGCAAAGAGTGCAAcacgaattttatttttcgtgaAGCATTTCTTCAGCACAGAAGGGAAGTGCACAACAAACAGACGAGCGAGAAGAAACGAAACGTCATCTCTGAACCACCAGCAACTGAAGTTGATACAATTACAAAACCGTTTCAGAACAGGGGAACGGCTAAACGGGGTAATTATGATGCTgaaaataccgaaacagatgATTCTAACAATGAggaaaaaaaagatatacaggtatcaaactataataaaaaaccggATGATATTCAAAGGACAAATTATGCAAATGAATCAAAAACTGTAATCCCAACAAACAAATGGATCAAATGTCTTAAATGTGATCACTTATCAAGTTCGGTTGCTGCGTTTAAAATACACTTATTTGCCTTACATAATGAAATGTCATTTAAATGTAACAAATGCGCCAGAGGTTTTGTGTTTCATAAATCTCTTCTTAGACACAAAAAATTGGGGATGTGCAAGGGGACAGTAAAAGAACAAATTACAGTAAAGATTTCCGAATGTACGGCGAACGATCGGAATGAAAAAGAACAGAAGACAGTGAAGATTCTCAAATGTACTGCGGATGATCAGAACGAAAAAGAGCAAAACATCAACAAAGATCCAGTGTTAGTTGATACCGTTGATGAAAAACCGtcacaaaataaagaaatacattttataagtaATGACAATACGTCATCTGATATTTCTGAAACAAATGAAAGTAATGAAGTAACAAATGGAAGTACTGAAGTAACAAATGGAAGTACTGAAGTAACAAATGAAAGTACTGAAGTAACAAATGAAAGTACTGAAGTAACAAAAGGAAGTAAAGAAATAACAAATGACAGTATTGAAGTAACAAATGAAAATAACAAAGGAACAAGGAATGTGAAGACGTTCGAAAACATTCAAACATATGCATGGATTGGATGTTTCAAATGCAATGAAATATTACATTCAAAGAGCGAATATGAAAAACACTTATTTGCCAAGCATGGTACGCGATTATATAACTGTAAAGAATGCAATCTAGATTTCTTATATGCAGAACCTTTTCTTTGGCACATGGGCGAGACGCACGGGGAACAAATAGCGAATAATGACGAACAGTTCTTAAATATATGGAACGGAAAAAAGAAAACATGCGATAAATGCGGGATAGAATATCTGCATAGGCATCACTGCATTTGTTGcaaaaattgcaatatttattttaagaaaaaatgtagtcTTTACGGACATTTAATAAAGGTTCATAAAGAGAGACTGAATCCGTGTGATATATGTGGAAAGAGTTTTCCAAGTAGGGACAGACTTAGGACGCACTTGAAAGCTCATAAGAAACGCGAAATTGTATGCAGTGTGTGCCGACAGACGTTTGTAGGCAGAGCAGAGTTGGACCGGCATTTAACTGAAACAAATGAAAGagcatataaatgtaaaatttgcGGTAAAGGATTTAATactcttaataatttttcagttcattttaatagtcattataaaaaaaaaactggccctCAAGTGAAATTCGTTTGCGAGTTTTGCGGAGAGCAGTACTGTGACAAAAAAAGCATCGAACGTCATATAGCAAGGTTTCACTTCGGAGAAAACGATAACATTATGTATGATGAAAGCAGCAActtgtatatttgtaatatttgtaaaagAGGATTTGCAACCGAAATTCTTACGAAAAAACATTTGCGGCGCCACACGTTTCtgaataaatgtaaagaatGCGGAGAAGAGTTCAGTACTCGTCAGGATTTGTTGAATCACGAAACGTGTCAACACGATagaaaattgtacaaatgtaGTCAATGCGATAAACGTTATAGGCTTCTCAGAGATGTAAAAATCCATGCAAGCGTTCACAATAAAATCCACGAATGCCATATATGTAAGCGTATGTTTTCGAGCAACTGCTCTCTAAAGAATCACAAGAAAACGCACGAGAACGTCAAACAATACCGATGTCATTTCTGCCAGAAAAGATTTCTGGTCGGCGCTAACCTTTCGACACACATACAGAACTGCCACAAAGACGAAAGCAATTCCATTAAACAGATTAAAGAATATTTATGCGCCGAATGTGGAAAAACTTTTTCAGATAAAGTTATGTTTTTGGAAGATAGTAACAAACACAAAGGTTTGAATCCGTATGAATGTAAGCATTGCAATAAAAAGTTCCCCGGAAAACCCTCTTTAGACAGACATATTCGACTAAACCATGGTACTGGTAAAAAACGAAATAGATGTAGTACACACTATGAGTGCAAAACGTGTAATAAGCAATTCAAGTGGAAGTCCCAGTTGGATTTGCATCATCGAACGCATACAGGGTTTAAACCGTATCAATGCGATCAGTGCGACAAAAGATTTACTCAGACGTCCCATCTGCAGCTGCACAAGGATATCCACGCCGGCGTGAAACGACACGTTTGTAGTTATTGCAAGAAAAGCTTTACTCTTAAACAGTATTTGAGGGCTCACATCAGAATTCATACGGGAGAAACGTACCAGTGTGCGTTTTGCGAACAGAAATTTCATCACTACAGTAACATGAGAAAACATAAATTGTCTCATAAAAACCTTGATGAAGGACAAAAATAA
Protein Sequence
MQVLKKSVCRTCLSERKLQSVFSKIKPEEVITYSEILLRGAFVQISEGDDMPLQICETCRDHLNQIYLFKQQCEKADFILRMQIKKDIETDPLELPVVKSRIHNATRLQSGAKNSLREVENSAANSSDDTDVQQNKNLNTYERRKSAIDLIKRNSDLTKSFITPFSDCKNDYTDLASDLFSKKVPLTRLGVVKVTNKQNSSILVSCRMCKKSYISGSFSQHWTANHEKKSESSGVENTETNLVIAKSSRKEKLPLSSNNQLPSSKENGDSNALKEKINDDHYYGRQTSEGIICLKCNKLFRSFKAFEKHLFVNHAKTKYSCKECNTNFIFREAFLQHRREVHNKQTSEKKRNVISEPPATEVDTITKPFQNRGTAKRGNYDAENTETDDSNNEEKKDIQVSNYNKKPDDIQRTNYANESKTVIPTNKWIKCLKCDHLSSSVAAFKIHLFALHNEMSFKCNKCARGFVFHKSLLRHKKLGMCKGTVKEQITVKISECTANDRNEKEQKTVKILKCTADDQNEKEQNINKDPVLVDTVDEKPSQNKEIHFISNDNTSSDISETNESNEVTNGSTEVTNGSTEVTNESTEVTNESTEVTKGSKEITNDSIEVTNENNKGTRNVKTFENIQTYAWIGCFKCNEILHSKSEYEKHLFAKHGTRLYNCKECNLDFLYAEPFLWHMGETHGEQIANNDEQFLNIWNGKKKTCDKCGIEYLHRHHCICCKNCNIYFKKKCSLYGHLIKVHKERLNPCDICGKSFPSRDRLRTHLKAHKKREIVCSVCRQTFVGRAELDRHLTETNERAYKCKICGKGFNTLNNFSVHFNSHYKKKTGPQVKFVCEFCGEQYCDKKSIERHIARFHFGENDNIMYDESSNLYICNICKRGFATEILTKKHLRRHTFLNKCKECGEEFSTRQDLLNHETCQHDRKLYKCSQCDKRYRLLRDVKIHASVHNKIHECHICKRMFSSNCSLKNHKKTHENVKQYRCHFCQKRFLVGANLSTHIQNCHKDESNSIKQIKEYLCAECGKTFSDKVMFLEDSNKHKGLNPYECKHCNKKFPGKPSLDRHIRLNHGTGKKRNRCSTHYECKTCNKQFKWKSQLDLHHRTHTGFKPYQCDQCDKRFTQTSHLQLHKDIHAGVKRHVCSYCKKSFTLKQYLRAHIRIHTGETYQCAFCEQKFHHYSNMRKHKLSHKNLDEGQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-