Vnig017874.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- ZNF212_2
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000074.1:771690-777047[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.17 4.7 8.4 1.9 1 23 362 384 362 384 0.97 2 17 0.26 7.2 7.8 9.4 1 21 390 410 390 411 0.95 3 17 0.0035 0.095 13.7 0.7 2 23 424 445 423 445 0.95 4 17 0.0012 0.034 15.2 7.6 1 23 451 473 451 473 0.98 5 17 0.0006 0.017 16.1 0.6 2 23 527 548 527 548 0.98 6 17 0.011 0.32 12.1 2.1 1 20 554 573 554 575 0.94 7 17 3.5e-06 9.6e-05 23.2 0.8 1 23 596 618 596 618 0.99 8 17 0.0066 0.18 12.9 6.6 1 21 624 644 624 645 0.94 9 17 0.032 0.87 10.7 0.2 1 23 648 670 648 670 0.98 10 17 9.2e-05 0.0025 18.7 0.8 2 23 677 698 676 698 0.97 11 17 3.7e-05 0.001 20.0 2.5 1 20 704 723 704 725 0.94 12 17 1.9e-05 0.00053 20.8 1.8 1 23 732 754 732 754 0.99 13 17 0.0028 0.078 14.0 8.5 1 21 760 780 760 781 0.94 14 17 0.0045 0.12 13.4 0.4 1 23 784 806 784 806 0.98 15 17 0.00032 0.0087 17.0 1.2 2 23 813 834 812 834 0.97 16 17 0.48 13 7.0 2.3 1 19 840 858 840 861 0.90 17 17 3.6 1e+02 4.2 3.4 3 19 868 884 867 887 0.86
Sequence Information
- Coding Sequence
- ATGCAAGAGTTAAAAATACGATGTTATGGCTTAAACAAAATGTGCCGGATCTGTTTGGTGCAGGACAAAGTTCTGGCTGACTTGTTTAGTGTATCTATAACGTTGAACGGCCCAATAGCAAATGCACTAGAAGTGTGCGCTCCTGTACGCGTAAAGAAAAATGACGGATATCCAAACTTCATATGCAAGGAATGTTACGTTGAACTGAGAACTTCGTAtgaatttgcaataaaagtaTTGCAATCTGAAGATACTTTACAGACTTATCTGGAAAAGCTACATATTCAACTAGGACAAAACACTCACGATTTTTCCAACGAAGTTGAATGCGAAAACACAGTTATTAACAATACCAGCACCGCTGCTAATCCAGAAAAGGCATTACGTTCTGGTAATTCGTATTTAGCAGAAGATACATCACAAGCAATTGTTCCCGAAACAAATGAGTCATCAACAAATTTCACATCATCAACAGCAAACAAAGACAACTATTTACTAGGGGAATATGCAACAACTTCATCCGGTGTATTGTCGCCTAATATAAAAAGGGAAATACAAGAAGGCGTCGAAACAGATGACGAAGAAACTGATTTTGAGCCGGAATATAATTCCAAAGATCCACACGACGAAATAGTAGTTAGCACTGGTAGTTTTAAACGTGACAAACAATCGAATTTTTTGGGTGGCAACAGGTATGAAGGATATATTTTGCCAACAGACAATGCGCAGACCGAGTTTAAAGCAGACGTCTCTGAAATCGAACTCGAAGAAGAAGGACTTCATGATTCATCAATGCGCGAAGAACTTCGCGATTCATCGTTGCGCGAAGCAGAACTTCGTGATTCAACGATGCGTGAAGAAGAACTTCGTGATTCATCGATGCGTGAAGAAGATGAACTTCATGATTCATCGATGCGCGAAGTAGAACTTCATGATTCATCGATGCGTGAAGAAGATGAACTTCATGATTCATCGTTGCGAGAAGAAGAACTTCACGATTCATCGATGCGCGAAGAAGATGAACTTCATGATTCATCGTTGCGCGAAGTAGAACTTCATGATTCATCGATGCGTTTCGAAAAGTATAACTGCAGAGCGTGCGAGGAACGTTTTGTCGACGACGAGACTCTAAACAAACACAAATGTATGCATATTCGTAAGAAACTGTTCAAATGCCGACACTGCGGGAAGTGTTTCTTCCTCAAGAAAGAAATGAATCATCACATATGTTCGCGGCGTAACAGAAAGCCGACGACGAAAAAACAAGTCAGTTGCAGTGTGTGTCGGAAGAAATTTGATTCAAAGTTCTCGTTGGAATCTCACGAACTCATTCATTCGAACAGCCGACCTCATAAATGTGAAATTTGCGAATCGACATTCAAACGTAAACATCATCTGACCGATCATCTTCGGTTACATTTTACCGATACAGAACCGGAGACCTGCCTTCGTTGTAACGAAACGTACTATACAAAAAATCATCGATGCACGAATAACGATGCATCGATGAAGACCAAACggcgtttaaacaaaaatagtcGCGACGTTTCGGGTAACGGAGAGCTCGCTTGGCATAGAAAGTGCAGCGTGTgtggaaaaatatttgataGTCGATGGCGCTTAGTTAGACACTTTCGAATtcatactggagagaaaccgtacAGTTGCGAAGAGTGCGGGAGAAGGTTCTCCGAACGATGGAAAGTAAAACGACATAAATGTCAAAAGGTTAATAGATCTGAAGAAGAATCTCTAACAGCGCAGGCACACTCGACTAAAGAACAATTTAGGTGTAATTACTGTCTGAAAGTTTTGTCGAATAGCGCAAATTTGAGGCGGCACATTCGAATTCATGCCGGAGAGAAACCGTACAGTTGCAAAAAGTGCAAAAGAAGTTTCTCGGACCAATCGCATATTAAACAACACAAATGTCGAACCGTTTACAGATGTGGACAATGTACGATGGTGTTCTTTGAAAAAAACGCCTTGGCAGAGCATGAGCTCACTCATTCGATTAAAGAACGATTGAGGTGTGATTACTGTCTGAAACTTTTGTCGAATAGCTCAAATTTGAGGCGGCACATTCGAATTCATaccggagagaaaccgtacAGTTGCGAAGAGTGCGGGAGAAGATTCTCCGATCGATCGCAATTAAAACAACATAAATGTCAAAAGGTTGAAGAAGAACAATTTAGGTGTAATTACTGTCAAAAACTACTGTCGACGAAACAAAATCTCGAACGACACATTCGAATTCATACCGAAGAGAAACCGTACAGTTGCAAAAAGTGCAAAAGAACTTTCTCAGATCAATCGTGTCTTAAACGACACAAATGTCGAACCGTTTATAGGTGTGGCCAGTGCACGATGGTTTTCTTTAAAGAGAGCGCTTTGACAGAACATGAACTGACTCATTCGATCAAAGAACAATTGAGGTGCAATTACTGTCAAAAACTGCTGTCATCGAAACAAACTCTCGAACGACACATTCGAATTCATACGGGAGAAAAACCTTTCGATTGTTCTAGTTGCGGAAAGAAATTCTCCGACGTGGGCAATTGTAAAAAACACAATGCAAAATGTCTAATGACTAATTATTGCGCGCACTGCAAGCAAACGTTTTCTCAAAAAGAACGATTCGACGAACATTTTTGCGTTCCTGATCAAAGAGTTCGGtGCGACATCAAGCCTAACAATTCGTTGAAAGCGCTGGATGATTGTCCAGAAGAGAATTTCCCGAATATCAATATGTTGCTAAGAATATTAGCTACATTGCCAGTATCTACGTCTACTGCGGAACGAACATTCTCAAGTTTGAAACggataaaaacaattcaaaggAACACGATAAAAGAAGATCGCTTGAATGGGTTGGCTGCTCTGGCAATGCATCGTGACATTGGAATCGCAGCAGACGAAGTCattaatgaattagcaaaaaaatCTCGAAAACATGAATTTCTTCTTTGA
- Protein Sequence
- MQELKIRCYGLNKMCRICLVQDKVLADLFSVSITLNGPIANALEVCAPVRVKKNDGYPNFICKECYVELRTSYEFAIKVLQSEDTLQTYLEKLHIQLGQNTHDFSNEVECENTVINNTSTAANPEKALRSGNSYLAEDTSQAIVPETNESSTNFTSSTANKDNYLLGEYATTSSGVLSPNIKREIQEGVETDDEETDFEPEYNSKDPHDEIVVSTGSFKRDKQSNFLGGNRYEGYILPTDNAQTEFKADVSEIELEEEGLHDSSMREELRDSSLREAELRDSTMREEELRDSSMREEDELHDSSMREVELHDSSMREEDELHDSSLREEELHDSSMREEDELHDSSLREVELHDSSMRFEKYNCRACEERFVDDETLNKHKCMHIRKKLFKCRHCGKCFFLKKEMNHHICSRRNRKPTTKKQVSCSVCRKKFDSKFSLESHELIHSNSRPHKCEICESTFKRKHHLTDHLRLHFTDTEPETCLRCNETYYTKNHRCTNNDASMKTKRRLNKNSRDVSGNGELAWHRKCSVCGKIFDSRWRLVRHFRIHTGEKPYSCEECGRRFSERWKVKRHKCQKVNRSEEESLTAQAHSTKEQFRCNYCLKVLSNSANLRRHIRIHAGEKPYSCKKCKRSFSDQSHIKQHKCRTVYRCGQCTMVFFEKNALAEHELTHSIKERLRCDYCLKLLSNSSNLRRHIRIHTGEKPYSCEECGRRFSDRSQLKQHKCQKVEEEQFRCNYCQKLLSTKQNLERHIRIHTEEKPYSCKKCKRTFSDQSCLKRHKCRTVYRCGQCTMVFFKESALTEHELTHSIKEQLRCNYCQKLLSSKQTLERHIRIHTGEKPFDCSSCGKKFSDVGNCKKHNAKCLMTNYCAHCKQTFSQKERFDEHFCVPDQRVRCDIKPNNSLKALDDCPEENFPNINMLLRILATLPVSTSTAERTFSSLKRIKTIQRNTIKEDRLNGLAALAMHRDIGIAADEVINELAKKSRKHEFLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -