Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000034.1:1214333-1216110[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.8e-05 0.0005 20.9 3.5 1 23 245 267 245 267 0.97

2 10 3.8e-06 0.00011 23.1 1.5 1 23 273 295 273 295 0.96

3 10 0.00023 0.0064 17.4 3.2 1 23 301 323 301 323 0.98

4 10 7.9e-05 0.0022 18.9 2.1 1 23 329 351 329 351 0.99

5 10 2.4e-06 6.7e-05 23.7 3.3 1 23 357 379 357 379 0.98

6 10 3.6e-05 0.001 20.0 3.1 3 23 387 407 385 407 0.96

7 10 0.00012 0.0034 18.3 7.1 1 23 413 435 413 435 0.98

8 10 6.2e-05 0.0017 19.3 4.2 1 23 441 463 441 463 0.97

9 10 1.3e-05 0.00035 21.4 1.5 1 23 469 491 469 491 0.96

10 10 0.0028 0.076 14.1 6.4 1 21 497 517 497 518 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.8e-05	0.0005	20.9	3.5	1	23	245	267	245	267	0.97
2	10	3.8e-06	0.00011	23.1	1.5	1	23	273	295	273	295	0.96
3	10	0.00023	0.0064	17.4	3.2	1	23	301	323	301	323	0.98
4	10	7.9e-05	0.0022	18.9	2.1	1	23	329	351	329	351	0.99
5	10	2.4e-06	6.7e-05	23.7	3.3	1	23	357	379	357	379	0.98
6	10	3.6e-05	0.001	20.0	3.1	3	23	387	407	385	407	0.96
7	10	0.00012	0.0034	18.3	7.1	1	23	413	435	413	435	0.98
8	10	6.2e-05	0.0017	19.3	4.2	1	23	441	463	441	463	0.97
9	10	1.3e-05	0.00035	21.4	1.5	1	23	469	491	469	491	0.96
10	10	0.0028	0.076	14.1	6.4	1	21	497	517	497	518	0.94

Sequence Information

Coding Sequence: ATGTGTCGCCTGTGTCTGATGCGCGACGTGAGTATGGTCAACATATTTTCGTATTCAATCAAGTTGAAAGTACAGATATCAAATGCGATATTGAAATGCGCTCCTGTTCAGATATCAAAACACGAAGAGATGCCGACCTATATTTGTCAAGTATGTTTAACACAACTGGAGAAATTTCATCAGTTTCAGGTGCAAATAGTGCAGTCTGATCAAACACTCCGACGCTATTTGCAACAGTCAAATCCCTCGCATCAACAAACCAAGCTTGCTGAATCTGTCAGTGAAGAGTTGTTTAATCAGCCCGCAAGTCAAAATCGTGATCCTGATATCGCAGTAAAATGCGAAtctttagaaaataattatgaatttgGTGAGGCTATATCTCTGAACGAAAATGCAGAGGAATTAACTATAAAATTCGAAGATTTGTATTCAAACGAGAAGGCACGTGAAAATCGTAAACAAATGACTATCAAATCCGAAACGGGAGTGTTTGGCATGAATATCGACAGGGAAGAAAACTCGTCTGTGAATTTTAATTCAGCAAACAAAATGagcaatgaaatattttttaaatctgaaattaaagaGGAACCGATGGATCATAAATCACTAATTCCAAAAGAATATGATCATGATACTGTAGAAGCTCTATCTGAAGATAATAATAAGCGAATTAATCAGATAagcgattttaataattacgaAGTGACTCATACAGACGAGAAGCTGTATCATTGTGACGTTTGTGATAAGTGCTTCGTCGACTCATCGAGTTTAAATACTCATAAACTTATACATGCCGGTGAGGCACCGTATCTGTGTAACGTTTGTAATAAGCGCTTCGTTACTTCATCGagtttaaatactcacaaacgtGTCCATACTGACGAGAAACCTTATTGTtgtgacgtttgcaataaaCGTTTTACTAAGTCCGTTAGTTTAGGTGTTCACAAGCGTACACATACTGGGGAagaaccgtatcaatgtgatgtttgtaataaacggTTTAATCAGCTAAGCGGTTTTAATTATCACAAACTTACTCATACGGGCGAGAAACCGTAtagatgtgacatttgtaataaatgtttcattacGTCATCCAGTTTAAACACtcacaaaaatatacataccggtgagaaaccgcATCTGTGTGACGTTTGCAGTAAGAGCTTTAAttctttatataatttaaataaacacaaacgtatacacactggtgagaaaccatatcggtGTGAACATTGTCATAAGTGCTTTAGTGAATCCAACAGTTTAAGCATTCACATACGTTTGCATACGggcgagaaaccgtatcaatgtgatgtttgtGATAAGAGGTTTACTCAATTAAACCAttttaataaacacaaattattacatactggcgagaaaccgtatcagtgtgacatttgtaataagcgTTTCAGAGAATCCAGCACTTTGAAAAGTCACAAACTagcacatactggtgaaaagtcttatcagtgtgacgtttgtaataagttttATACTCGGTCATACTATTTGAATCATCACAAATGTAAGCAGTCGTGa
Protein Sequence: MCRLCLMRDVSMVNIFSYSIKLKVQISNAILKCAPVQISKHEEMPTYICQVCLTQLEKFHQFQVQIVQSDQTLRRYLQQSNPSHQQTKLAESVSEELFNQPASQNRDPDIAVKCESLENNYEFGEAISLNENAEELTIKFEDLYSNEKARENRKQMTIKSETGVFGMNIDREENSSVNFNSANKMSNEIFFKSEIKEEPMDHKSLIPKEYDHDTVEALSEDNNKRINQISDFNNYEVTHTDEKLYHCDVCDKCFVDSSSLNTHKLIHAGEAPYLCNVCNKRFVTSSSLNTHKRVHTDEKPYCCDVCNKRFTKSVSLGVHKRTHTGEEPYQCDVCNKRFNQLSGFNYHKLTHTGEKPYRCDICNKCFITSSSLNTHKNIHTGEKPHLCDVCSKSFNSLYNLNKHKRIHTGEKPYRCEHCHKCFSESNSLSIHIRLHTGEKPYQCDVCDKRFTQLNHFNKHKLLHTGEKPYQCDICNKRFRESSTLKSHKLAHTGEKSYQCDVCNKFYTRSYYLNHHKCKQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -