Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000011.1:1585522-1587194[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00017 0.0048 17.8 2.2 2 23 185 206 184 206 0.97

2 11 5.6e-05 0.0015 19.4 4.3 2 23 215 236 214 236 0.98

3 11 0.00017 0.0046 17.9 1.5 1 23 241 263 241 263 0.96

4 11 0.016 0.44 11.6 0.6 2 23 269 291 268 291 0.96

5 11 7.6e-05 0.0021 19.0 2.7 2 23 298 319 298 319 0.97

6 11 0.0064 0.18 12.9 5.2 1 23 325 348 325 348 0.94

7 11 3.9e-06 0.00011 23.0 1.0 1 23 383 406 383 406 0.97

8 11 0.00013 0.0036 18.2 2.8 3 23 416 436 415 436 0.99

9 11 2.3e-05 0.00064 20.6 0.2 1 23 442 464 442 464 0.98

10 11 0.0003 0.0082 17.1 0.3 1 23 470 492 470 492 0.98

11 11 5.6e-05 0.0015 19.4 2.8 1 23 498 520 498 520 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00017	0.0048	17.8	2.2	2	23	185	206	184	206	0.97
2	11	5.6e-05	0.0015	19.4	4.3	2	23	215	236	214	236	0.98
3	11	0.00017	0.0046	17.9	1.5	1	23	241	263	241	263	0.96
4	11	0.016	0.44	11.6	0.6	2	23	269	291	268	291	0.96
5	11	7.6e-05	0.0021	19.0	2.7	2	23	298	319	298	319	0.97
6	11	0.0064	0.18	12.9	5.2	1	23	325	348	325	348	0.94
7	11	3.9e-06	0.00011	23.0	1.0	1	23	383	406	383	406	0.97
8	11	0.00013	0.0036	18.2	2.8	3	23	416	436	415	436	0.99
9	11	2.3e-05	0.00064	20.6	0.2	1	23	442	464	442	464	0.98
10	11	0.0003	0.0082	17.1	0.3	1	23	470	492	470	492	0.98
11	11	5.6e-05	0.0015	19.4	2.8	1	23	498	520	498	520	0.99

Sequence Information

Coding Sequence: ATGACCATTCCTAAGTTTTCTGATTTTCCTAAAATTTGTCGAActtgtttattacaaaaaaataaaatggaatcTTTGACTGAATGTCAAGTACCAGAAATGCTATTACATTTTACTTCCGTTCAGATCGAAATTGATGACGGTTTACCAGTCCTTATATGTTCAGAATGTCTCACTCAAATAAAAACCTGTTGTAAATTTAAACAACAATGTGAGGAAAATGATCAGTTATTGCATCGCATAAAACTAGAAAATACAGATGCTTCGTTTCGATTCGTTTCTGATTTTAAACTCGAAAATACAGATGCTTCGTTTCAGCATATTTCTGATTTTAAACTGGAAAACGAATCAACAGAACAAGATATCGAAGATCAGACCACAGATTCACTCAACGCTTTGTTAGAAGACAGTGTAATTAATGATAAAAGTCGGGTTATAAAGAAAGCGAAAAGAATACCACGggagaaaaaaactaaaagattaattgtgtttaaaaaagacaaaatacAAACCGAAAACAGTAGTTTGAAGTACGTGAAACAAGACAATTGTGTATGTAAATTGTGCGGTAAAGTTTTGGTAACTGTTCATACTTTAGCACGTCATATGCAAACACATAATAAAGACCgtgaatttacaaataaatgtaCGATTTGTCAGAAAGGTTTTTATGAGAAAGGGCATTTCAATAAACACATGCGACGTCACGAAGGCGCAAAGCATAACTGTGATATATGCAGCAAGAGCTTTTACGAATTAAGCACTTTAGCATCGCATATGAAAGAACACAACTTAGATCCCATTTCGTGTTCAACATGCAACAAGCAATTTATGGTAAAACTACAGCTAGATATTCACATGATGAGAAGTCATTTAAATAAACCTAGCAATGAATGTTCAGTGTGCGGGAAACGATTCGCACATAGAAGTAAATTGGAAACTCATAAATTAAGACATCAGTCGGTGCGCTCTTACTCTTGCGACATCTGTGATACTAAATTTAAACACATTAATTCATTAAATCGACACTGTAAAACTGTTCATCAAGgcattaaacaaaaagaaaaggaaGTTTGTAAGTTTTGTGGAATATCTGTTACATATTTGCAGAATCACATATGGGCGAAGCACAGTACAGAAAAACCATTCAGCTGTGAAGAATGTGGAGCTTGCTTTGTAACTAAATCGTTATTGAGTATACATATTCGGTCAAAACATCGGGGCGAAGCTGTATTTTGTGCGTTGTGTAGTGTATGTGGAAAACGATGTCATTCTAAAGCAGCGTTAGAAGTACATATGCGAACACATACGAAGGAACGGCCGTTTAAATGTGCCATTTGCAATAAAGGCTTTGCGTCAACGAGCGCATTGAAGGTTCATTCTCGAATTCATACAGGCGAACGACCGTATGCTTGTTCGACGTGCGGAAAAGATTTTGGTTCAAGTCAAGTTCTCAAAATTCATCGCAGAATTCACACTGGAGAAAGGCCGTATACTTGCAATGTTTGTGAGAAATCGTTTAGGCAAAGATGCGTGTTAGTAACTCATATGAAAATTCATTAA
Protein Sequence: MTIPKFSDFPKICRTCLLQKNKMESLTECQVPEMLLHFTSVQIEIDDGLPVLICSECLTQIKTCCKFKQQCEENDQLLHRIKLENTDASFRFVSDFKLENTDASFQHISDFKLENESTEQDIEDQTTDSLNALLEDSVINDKSRVIKKAKRIPREKKTKRLIVFKKDKIQTENSSLKYVKQDNCVCKLCGKVLVTVHTLARHMQTHNKDREFTNKCTICQKGFYEKGHFNKHMRRHEGAKHNCDICSKSFYELSTLASHMKEHNLDPISCSTCNKQFMVKLQLDIHMMRSHLNKPSNECSVCGKRFAHRSKLETHKLRHQSVRSYSCDICDTKFKHINSLNRHCKTVHQGIKQKEKEVCKFCGISVTYLQNHIWAKHSTEKPFSCEECGACFVTKSLLSIHIRSKHRGEAVFCALCSVCGKRCHSKAALEVHMRTHTKERPFKCAICNKGFASTSALKVHSRIHTGERPYACSTCGKDFGSSQVLKIHRRIHTGERPYTCNVCEKSFRQRCVLVTHMKIH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01530902;
90% Identity: iTF_01530902;
80% Identity: -