Vnig017201.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000069.1:538243-547119[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0019 0.054 14.5 8.0 1 23 121 143 121 143 0.98 2 14 0.0022 0.059 14.4 5.0 1 23 149 171 149 171 0.98 3 14 9.6e-05 0.0027 18.6 2.7 1 23 177 199 177 199 0.98 4 14 0.00047 0.013 16.5 6.8 1 23 205 227 205 227 0.99 5 14 5.1e-05 0.0014 19.5 1.9 1 23 382 404 382 404 0.98 6 14 0.00031 0.0085 17.1 1.8 1 23 410 432 410 432 0.98 7 14 0.27 7.4 7.8 1.3 1 23 438 461 438 461 0.95 8 14 0.0097 0.27 12.3 4.5 1 23 758 780 758 780 0.99 9 14 0.00041 0.011 16.7 0.3 2 23 792 814 791 814 0.96 10 14 0.0092 0.25 12.4 6.1 1 23 820 842 820 842 0.96 11 14 0.0027 0.075 14.1 2.5 1 23 848 870 848 870 0.95 12 14 0.00015 0.0041 18.0 0.4 1 23 876 898 876 898 0.97 13 14 0.00013 0.0035 18.3 4.1 1 23 904 926 904 926 0.98 14 14 0.00032 0.0088 17.0 1.7 1 23 932 954 932 954 0.97
Sequence Information
- Coding Sequence
- atgcctcaGGATTCTATAAGCCCAAAGGACGTTTTACAAAGCTCTGTGGAAGAtgacataaaaaaagaaaccaaaaataatGCTGAAATCGACACTGAATTGAGAAATGAACGGAACAATTTAAATACAAGAATGAAACTTGAAGTCGAATTAGCCAAAACAAATGCAATTTCACATGAGTCTGTAGACAATATTCATTATTTACCaaagaaaattaaacagaaatataaaataggtGAAAAGCCTATGAAACACTTGCCAAgaattgtattttcaaaacaGTGCACTGAAAAaggcaataataaaaaaaagattcttcaAGACACCGAAACTCAACAGAAAGCTTCTATTAAGAAACTGCATCAGTgcgatatttgtaaaaaatatttctcgcaGAAGAATTGTTTAGTTAGACATAAACGGcgacatactggcgagaaaccgttCCACTGTGAAGTTTGCAACAAGCGGTTCTCGCGAATGTGTGTTTTAAAAGTTCATATGAAAATACATACTGGAGAAGCACCACATCAGTGTGATGTGTGCGGCAAATGTTTTGCGGAATTAGGTACTTTAAATGTCCATAAACGtaaacatactggtgagaaaccttaccagtgtgacgtttgtagcAAGTGTTTTTCACACATAAGCACACTGCACGTACATCTACGTAATCATACCGGCGCAAAACCACATCGATGCGAGaTAAATAAAGGGGACGACCTACCGGACTGCATATGTGACTCATGTCTAGGGCAATTATTAAAGTCGTATCAGTTTCAAGTTCTGGCAGttgaatctgaaaaaatattatatcaacGTCTAAAGAAATCACAGCCAAGTGAGATCTACaatgatttaaaaatcaaatcagaACCGCTTCAGAGCTCAGAATCAGAAGACGAGCTAAACAATTTAAGTGCAGCAATAAAAGTTGAAATAAATTTGGAGAAACCAGATGAAAATTCACACGAATCTGTagataataatcattatttacCAAAGAAAATAGAAGAGAAGTATAAAATAGATGAAAAGTCAGCAGAATGCTTGCCAAGAACATTTTCAGAACAGTGCACTGAAAACAGCAATAAGGTTCTTCAAAACACCAAAACCCAACAAAAAGCTGGTGAGAAGCTGTTTCAGTGTGAACTTTGCAACAAGCGGTTTACGCGAATGTATGTTCTGAAAGTTCATATGAAACTACATAATGGAGTACCACTTCACCAGTGCGACGTATGCGGTAAATGTTTCGAAGAAGTGGGTGCTTTAAATATCCACAAACGTAAACACACTGGTGAGAATCCTTACCAGTGCGACGTTTGTGAAAATAAATGGTTTTCGCGTAAAAGCACGCTGGACAGACATAAACTGCAGCATACCGGTGTGAAACCTTATCTgtgtgataTAAATAAAGGGGACGAGCTACCGGACTGCATATGCGACTCATGTCTGGGGCAATTATTAAAGTCATATCAGTTTCAAGTTCTGGCAGttgaatctgaaaaaatattatatcaacGTCTAAAGAAATCACAGTCAAGTGAGATCTACAATGATTTGAAAATCAAATCAGAACCACCTCAGAGCTCAGAATCAGAAGACGAGCGAAACAATTTAAATGCGGCAATAAAAGTTGAAATAAATTTGGAGAAAACAGAAGAAATTTCACCTGAATCCTGGAAAGCAATGAATAATTTAGATATGTCAGTGTCGTCTAAACAGAAAATTTGTAGAGTTTGTTTAGAAGTAAACAATGCCtctttttttgatgttttttcaaaagaaTATGTGTCCAATAAAACAATTGCAAATCTGATCATGGAATGTGCTCCCATTTGTATTTCTCGTGGCGACGGCTTACCAGATTTGATATGCGACGAATGTTTCGATAGATTACAAATTGCGAATCAATTTCGGTCGTTATGCGTTCAGTCTGATGGTGAATtgcgaaataaaaatgaaaattttgtaaCGAAAAATGAACAATCAAACAGTGATAATGATTGCCTTATATTCCAAGAACTGTTTTTTGGAAATGGTTTATTTAttcctaataaaaataaagatacacGTGACAATAGAAAAGTTGAACAAAAAGAAAGTTACTCTTCAAGCAGTACTGAAAAAAATGACggacttaaaaacaaaataaaaccagATTCGGAAGTTGATGATAATTTAAACAACGTTGAATCTAATACATGGTCAATGAGTGATAGTGATAATGAAagcaaaaatgttcaaaaaacacATCCAAAACCAGAATTCAAAtgtgatgtttgcaaaaaaatattcaggcaTCTTAAAGTTATGGAAAACCATAAACGAAAACATGTTAAAAGACAGTCGAAGAAAGATAGTTCGTTAACTTGTGATAAATGCGGCAAAGTATTAAGTAATCATGTTGGATTATTAGCCCATCTTAAAACAGTTCACAGTAAAGAAAGGCCTTTCGAATGTAAAACGTGTCATAAAAGATTCAAAGATAAACAAACCCTTGGCAAACATAATTTCACACACAACAGTGAACTATCTTTTTTGTGCGAACAATGCGGAATGGCTTTTAGATTTGTTAGTAATTTGTACAAACATCATTACACACATTCAGATGTGAGAAAATATATGTGCAATATTTGTGGGAAGTCGTTCAAAACCGAAGAAGGGCGAAAGGAACATAGGATTATACATACAGGGGAAAAACCATTTGAGTGTGTTCATTGTAATAAACGGTTTAATTTCAAACGTAATTTAAAGGAGCATCAATTGGTTCACACAAAGGAAAGGCCTTTTAGATGTAATATATGCAACGAAGTTTACCGATCAAGAACGAAGTTGACGATGCATAGGAAAGCTCATCTTTTATAA
- Protein Sequence
- MPQDSISPKDVLQSSVEDDIKKETKNNAEIDTELRNERNNLNTRMKLEVELAKTNAISHESVDNIHYLPKKIKQKYKIGEKPMKHLPRIVFSKQCTEKGNNKKKILQDTETQQKASIKKLHQCDICKKYFSQKNCLVRHKRRHTGEKPFHCEVCNKRFSRMCVLKVHMKIHTGEAPHQCDVCGKCFAELGTLNVHKRKHTGEKPYQCDVCSKCFSHISTLHVHLRNHTGAKPHRCEINKGDDLPDCICDSCLGQLLKSYQFQVLAVESEKILYQRLKKSQPSEIYNDLKIKSEPLQSSESEDELNNLSAAIKVEINLEKPDENSHESVDNNHYLPKKIEEKYKIDEKSAECLPRTFSEQCTENSNKVLQNTKTQQKAGEKLFQCELCNKRFTRMYVLKVHMKLHNGVPLHQCDVCGKCFEEVGALNIHKRKHTGENPYQCDVCENKWFSRKSTLDRHKLQHTGVKPYLCDINKGDELPDCICDSCLGQLLKSYQFQVLAVESEKILYQRLKKSQSSEIYNDLKIKSEPPQSSESEDERNNLNAAIKVEINLEKTEEISPESWKAMNNLDMSVSSKQKICRVCLEVNNASFFDVFSKEYVSNKTIANLIMECAPICISRGDGLPDLICDECFDRLQIANQFRSLCVQSDGELRNKNENFVTKNEQSNSDNDCLIFQELFFGNGLFIPNKNKDTRDNRKVEQKESYSSSSTEKNDGLKNKIKPDSEVDDNLNNVESNTWSMSDSDNESKNVQKTHPKPEFKCDVCKKIFRHLKVMENHKRKHVKRQSKKDSSLTCDKCGKVLSNHVGLLAHLKTVHSKERPFECKTCHKRFKDKQTLGKHNFTHNSELSFLCEQCGMAFRFVSNLYKHHYTHSDVRKYMCNICGKSFKTEEGRKEHRIIHTGEKPFECVHCNKRFNFKRNLKEHQLVHTKERPFRCNICNEVYRSRTKLTMHRKAHLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -