Vnig012387.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
-
Assembly
GCA_034508555.1
Location
JAVRKA010000034.1:2112693-2125688[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.0018 0.051 14.6 0.3 5 23 540 558 538 558 0.96
2 10 2.4e-06 6.6e-05 23.7 3.5 1 23 564 586 564 586 0.99
3 10 3.5e-05 0.00095 20.0 5.6 1 23 592 614 592 614 0.99
4 10 3.2e-05 0.00089 20.1 9.4 1 23 620 642 620 642 0.99
5 10 2.7e-05 0.00075 20.4 6.4 1 23 648 670 648 670 0.99
6 10 4e-07 1.1e-05 26.1 2.3 1 23 676 698 676 698 0.99
7 10 0.00043 0.012 16.6 10.9 1 23 704 726 704 726 0.99
8 10 3.2e-05 0.00089 20.1 9.4 1 23 732 754 732 754 0.99
9 10 3.9e-05 0.0011 19.9 9.0 1 23 760 782 760 782 0.99
10 10 4.1e-05 0.0011 19.8 3.5 1 23 788 810 788 810 0.99

Sequence Information

Coding Sequence
ATGAAGGAAATATATGTAAACGCACACGGTTTAGGCGCAATGTGTCGATTGTGTTTAGCAAAAAACGTTACCCTACTAGACATCTTTTATTTTTCACCTACGATCGGAAACCATTTGTCGAATATTGTAATGCGGTGTGCTCCCGTTCAGATAAGAAGGCTTGATGAGATGCCTCATTTGATTTGCCGTTCATGTTACACTAAACTCGAGCAATTTCATCAGTTCCAGACGCAAATTCTACAGTCTGATAAAACACTGCGACGGTATGTACAGCAACTGCTTGGTTCGGAAAAACAAATCAAGTCTGAATGTTCTAATCAGACGTCTTCTGAGGAACATTTAATCGATAAAACTAATGACTGTGATGTCACTGTTAAATATGAACCTATAGAAATTCACTGTATAGTTGACGGGGATCTCGATAGGAAAGAAATTGGACCTACAAATGAGAATTGTGCAGACAAAAGTACCGAAGATATGGTTTTAAAATTCGAAATCAAAGATGAGCCAACGAATTGTAATTCACTAATTGATGATACTGTAGAAACTGCAGAAAATGATGATGTTTGTGAAATCGACTTCGAAGACTCGAAGGTCGATCTTGGCCCCTTATTGGGGAACAGTGTAACAGAATGTCTGAACACAAGTAAAGAGgagaagaaaaatatttcagtaaattatGGGAATGATCAAAAAGCAACAAAAAAGAAGTATCACGGCGACATTTGTAAAACGACTTTTCTCAGCTCCCGTGACGTCTTTCAGACTCGTACTGGTCAAGAGAGAAAGGCAACTGAATTGTTGTTAGGCTGTAAAGCCAAAACTTTAGATGCTAGTTGTTGGACACATCTAGTGGAAAAGTTCACTGATGGTGACACCATTGTTGTTTGGTTGAACGATTGTTTTACTGTTGGAAAATACGACTGTTGCGCAATGTGTCGACTGTGTTTAGCAAAAAACGTTACTCTACTAGACATCTTTTATTTTTCACCTACGATCGGAAACCATTTGTCGAATATTGTAATGCGGTGTGCTCCCGTTCAGATAAGAAGACTTGATGAGATGCCTCATTTGATTTGCCGTTCATGTTACACTAAACTCGAGCAACTTCATCAGTTCCGGACGCAAATTCTACAGTCTGATAAAACACTGCGACGGTATGTACATCAACTGCTTGCTTCGGACAAACAAATCAGGTCTGAATGTTCTAATGAGACGTCTTCTGAGGAACATTTAATCGATAAAACTAATGACTGTGATGTCACTGTTCAATATGAACCTATAGAAATTCACTATATAGTTGGCAGGGATTTCGATAGGAAAGAAATTGCACCTACAAATGAGAATTGTGCAGACAAAAGCACCGAAGATATGGCTTTAAAATTCGAAATCAAAAATGAGCCAACGAATCGTAATTCACTAATTGATGATACTGTAGAAACTGCAGAAAATGATGATGTTTGTGAAATCGACTTCGAAGACTCGAAGGTCGATCTTGGCCCCTTATTGGGGAACAGTGTAACAGAATGTCTGAACACAAGTAAAGAGgagaagaaaaatatttcagtaaattatGGGAATGATCAAAAAGCAACAAAAAAGAAGTATCACGGCGACATTTGTAAAACAACTTTTCCCAACTCCCGCGATTTAATTAGACACAAACGCAAACATTTTGGCgtgaaaccatatcagtgtgacgtttgtaaaaagagtTTTAGCTCTTCAACTTACTTGACTACTCACAAACGCactcatactggtgagaaaccatatcagtgtgacgtttgtagtaagtgtttcaaccaatcacagcATTTAATTATtcacaaacgcacacatactggtgacaaaccatatcaatgtgacgtttgtagtaAGTGTTTCAACCGATCACACCATTTAATTAGACACAAacggacacatactggtgagaaaccatatcaatgtgacgtttgtagtaAGTGTTTCAACCattcacaaaatttaattaatcacaaacggacacatactggtgagaaaccatatcagtgtgacgtttgtaaaaagagtTTTATCTCTTCAAGTCAGCTGACTAAtcacaaacgcacacatactgatgagaaaccatatcaatgtgacgtttgtagtaAGTGTTTCAACcatttacaccatttaattagacacaaacggacacatactggtgacaaaccatatcaatgtgacgtttgtagtaAGTGTTTCAACCGATCACACCATTTAATTAGACACAAacggacacatactggtgagaaaccatatcaatgtgacgtttgtagtaAGTGTTTCAACCAATCACACCATTTAATTAGACATAAacggacacatactggtgagaaaccatatcaatgtggcgtttgtaataagtgttttagCCAATTAACTACTTTAAGTAATCACAAGCGCATACATTATGAGAACCAATGTTAG
Protein Sequence
MKEIYVNAHGLGAMCRLCLAKNVTLLDIFYFSPTIGNHLSNIVMRCAPVQIRRLDEMPHLICRSCYTKLEQFHQFQTQILQSDKTLRRYVQQLLGSEKQIKSECSNQTSSEEHLIDKTNDCDVTVKYEPIEIHCIVDGDLDRKEIGPTNENCADKSTEDMVLKFEIKDEPTNCNSLIDDTVETAENDDVCEIDFEDSKVDLGPLLGNSVTECLNTSKEEKKNISVNYGNDQKATKKKYHGDICKTTFLSSRDVFQTRTGQERKATELLLGCKAKTLDASCWTHLVEKFTDGDTIVVWLNDCFTVGKYDCCAMCRLCLAKNVTLLDIFYFSPTIGNHLSNIVMRCAPVQIRRLDEMPHLICRSCYTKLEQLHQFRTQILQSDKTLRRYVHQLLASDKQIRSECSNETSSEEHLIDKTNDCDVTVQYEPIEIHYIVGRDFDRKEIAPTNENCADKSTEDMALKFEIKNEPTNRNSLIDDTVETAENDDVCEIDFEDSKVDLGPLLGNSVTECLNTSKEEKKNISVNYGNDQKATKKKYHGDICKTTFPNSRDLIRHKRKHFGVKPYQCDVCKKSFSSSTYLTTHKRTHTGEKPYQCDVCSKCFNQSQHLIIHKRTHTGDKPYQCDVCSKCFNRSHHLIRHKRTHTGEKPYQCDVCSKCFNHSQNLINHKRTHTGEKPYQCDVCKKSFISSSQLTNHKRTHTDEKPYQCDVCSKCFNHLHHLIRHKRTHTGDKPYQCDVCSKCFNRSHHLIRHKRTHTGEKPYQCDVCSKCFNQSHHLIRHKRTHTGEKPYQCGVCNKCFSQLTTLSNHKRIHYENQC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-