Vnig005090.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000009.1:8698398-8699384[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.01 0.27 12.3 0.9 1 23 49 71 49 71 0.98 2 10 0.014 0.38 11.8 2.1 1 23 79 101 79 101 0.98 3 10 0.00075 0.021 15.8 0.5 1 23 107 130 107 130 0.94 4 10 1e-05 0.00028 21.7 1.1 2 23 137 159 136 159 0.94 5 10 5.3e-05 0.0015 19.5 0.7 2 23 166 187 165 187 0.97 6 10 5.2e-06 0.00014 22.6 2.2 1 23 193 215 193 215 0.98 7 10 0.00018 0.0051 17.8 1.1 3 23 225 244 224 244 0.97 8 10 1e-05 0.00028 21.7 0.8 2 23 251 272 250 272 0.97 9 10 1.3e-05 0.00035 21.4 0.5 1 23 278 300 278 300 0.97 10 10 2.1e-07 5.8e-06 27.0 1.4 1 23 306 328 306 328 0.97
Sequence Information
- Coding Sequence
- ATGAAATCGGAAGACAGTAATGACGACGACGATGACGACAATCTCAGTGACGACGACAATTTTTCGGATcaagatattaaagaaagatCCGATATTTGCGAACTGAAAGACTGTTCGAATACTGAAAAGGAATATCGAAAAGTTCATAAATGCGATATTTGTAATTTGGAAGTGAAACGTGCAGGAATATTGCAACGTCACAAAAACACGCACGATAAAGAAAATCCTCGAACTTATGAATGCGAAATATGCCACGACGCATTCTACAAGAAAAGAGTTTTAAGATTACATATGACGCGGCATGACACAGTAAAAAGACATCAGTGTCCTAAATGTGACAAACGTTACAAAGGCATCGATCCTCTGATAAGACATATTGGCAGCAAACATAAAGATTTAAAACCGATTCATTGTTCTATTTGCTCTAAATCGTTCACATTACAGTCCCAGCTGAGACGCCATTTGGCTGTCATTCACAAAGTACAAGAACAGCTGAAATGTTCAGTTTGCGAcgaaactttttcagttcgttATTTGCTGAAACAACACGAAATGAAACACCAGTCTGATAAGCCTTACTCTTGTTCGCAATGTGATAAGTCGTTCACGTCTCCTTATTTGCTGAACCtccattttaaaaaacacacgGGTAACGCTCCTCCACCCATTTTATGTAACATTTGTGGTAAACAGTTCAACACGAATAGCTTGAAGAAGCATATGTTAGTACACACGGAAGACAGACCAGTTGAATGCGATTTATGCGGAAAGTCGTTCAAATCTAAACGCGACATGAAAGTCCATCGGGACACGCATTCCGGTATAAGACGCTATTTTTGTAGTTTGTGCGGTAAAGGTTTTACCGCATCGAATTCTCTAAAACAGCACATGTTAATTCATACGGGAGAAAGACCGCATGTGTGTAATGTATGTGGAAAGGCTTTCACTCAAAAAAGTGTACTCAAAACGCATATGAAAATACATTGA
- Protein Sequence
- MKSEDSNDDDDDDNLSDDDNFSDQDIKERSDICELKDCSNTEKEYRKVHKCDICNLEVKRAGILQRHKNTHDKENPRTYECEICHDAFYKKRVLRLHMTRHDTVKRHQCPKCDKRYKGIDPLIRHIGSKHKDLKPIHCSICSKSFTLQSQLRRHLAVIHKVQEQLKCSVCDETFSVRYLLKQHEMKHQSDKPYSCSQCDKSFTSPYLLNLHFKKHTGNAPPPILCNICGKQFNTNSLKKHMLVHTEDRPVECDLCGKSFKSKRDMKVHRDTHSGIRRYFCSLCGKGFTASNSLKQHMLIHTGERPHVCNVCGKAFTQKSVLKTHMKIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -