Vnig005571.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000011.1:1603825-1605476[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00015 0.0042 18.0 1.3 2 23 193 214 192 214 0.96 2 12 2.7e-05 0.00076 20.4 5.1 1 23 222 244 222 244 0.98 3 12 0.0012 0.034 15.2 0.2 1 23 250 272 250 272 0.98 4 12 0.0015 0.042 14.9 0.4 2 23 278 299 277 299 0.97 5 12 1.2e-05 0.00032 21.5 0.6 2 23 306 327 306 327 0.96 6 12 0.023 0.64 11.1 3.7 1 23 333 356 333 356 0.97 7 12 0.11 3 9.0 0.3 2 23 365 384 364 384 0.83 8 12 0.00015 0.0042 18.0 0.0 1 23 390 413 390 413 0.97 9 12 0.0039 0.11 13.6 1.3 3 23 423 443 422 443 0.99 10 12 3.3e-05 0.0009 20.1 0.2 1 23 449 471 449 471 0.98 11 12 2.8e-06 7.6e-05 23.5 0.5 1 23 477 499 477 499 0.98 12 12 0.00013 0.0037 18.2 3.2 1 23 505 527 505 527 0.98
Sequence Information
- Coding Sequence
- ATGGagtctgtttttaaattagatGTTCCTAAAATGTTGTCTACATTTACAAATATTCAgATTGCAACAGATGACACTTTACCTGTGCTCGTTTGTTTGGAATGCTTgcagcaaataaaaaattgttatcaattcaagcAGCAATGCGAAAACAATGATCGAGTATTGCATCGGATTCAATTACAAATAACAGCTAAATTGTTTCAAAAGATTCCCAATATCGAAcacgaaataaatattaaatcagaGGATTATTCAAATGAATCGTTGGAACAAGTTAACACAGACGATAGTAATGATTATGCGGGAGATTTTGTGAAAGCTAATAATGTAaacattgaatttaaaaaagaaaataaattaccaaATAAAAAAGTGACAACTGAGAAACACATTTGTGATTCGGAGCAAGATAACACAGGTGATAGTAATGATTATAATGTGAGTGAATTTGAGAAacataataatgtaaataatgtcattgaacataaaaaacaaaacgaattgcaaattaaaaaagtgaaaaaagagAGACGTATTTACGATAATCTCGATTCGTCCGAGAAAAGGAATTGCATATGTAAAATATGTGGTAAAGTGTTGGTAACGATTCATACTTTAGCCCGCCATATGCAAATACACAATAAGGATCGGGAGTTCACGCATCGATGCGAAGTTTGTCAGAAAGGTTTTTATGAGAAAGGTCACTTGAATAAACACATGCGACGTCACGAAGGAGTGAAGCGGTACAGTTGCGAGGTATGTAATAAAGGCTTTTATGAACTGAGCGCTCAGGCTGTACATATGAAAAAACATAATGCAAAGCCAGTATCATGTACAGTGTGTAATAAAGAGTTTATGGTTAAATTGCAACTCGATATTCACATGAAAACTCATTCGAATGAACCGAGTAATGTTTGTTCTTATTGCGGTAAAAGGTTTGCTCAACCAAATAAACTAGAACGTCACAAACTGAGCCATCAATCAATTCGGGCTTATTCGTGTGAGCTTTGTGAaagcaaatttaaatattcatttacaTTGAAACAGCATCACGAAACGGTCCATCGAGGCGTGAAAAGAAAAAAGGACGTTTGCAATATTTGCGGGAAATCTGTGTCTTATTTAAAATCACATATGTTAGGAAAACACAGTAATCAGAGACCATTTAATTGTGAAGAGTGCGGTGCGGGGTTTGTGTCGAATGCATTGTTAAATGTTCACGTACGCTCAAAACATAAAGGTGAATTGGTCTTTACGGATCTTTGTAGTGTTTGTGGAAAACAGTGCCAGTCTTCAACAGTTCTAGAAATTCATATGCGATCGCACACTAAAGAAAGACCTTTCGAGTGCAATACATGCAATAAAGGATTCATGTCGGCCGGCGCACTTAAAGTACATGTTAGGTCGCATACGGGTGAACGGCCTTACGTATGCAGTACTTGCGGAAAAGCGTTCAGTACTAGCCAACTGCTCAAGGTTCACAATAGAATTCATACCGGGGAACGCCCTTATAGATGTGGAGTTTGTGAACGGACGTTTAGACAACGGTGTGCTTTAAGGACTCATTTGAAGTTACACTGA
- Protein Sequence
- MESVFKLDVPKMLSTFTNIQIATDDTLPVLVCLECLQQIKNCYQFKQQCENNDRVLHRIQLQITAKLFQKIPNIEHEINIKSEDYSNESLEQVNTDDSNDYAGDFVKANNVNIEFKKENKLPNKKVTTEKHICDSEQDNTGDSNDYNVSEFEKHNNVNNVIEHKKQNELQIKKVKKERRIYDNLDSSEKRNCICKICGKVLVTIHTLARHMQIHNKDREFTHRCEVCQKGFYEKGHLNKHMRRHEGVKRYSCEVCNKGFYELSAQAVHMKKHNAKPVSCTVCNKEFMVKLQLDIHMKTHSNEPSNVCSYCGKRFAQPNKLERHKLSHQSIRAYSCELCESKFKYSFTLKQHHETVHRGVKRKKDVCNICGKSVSYLKSHMLGKHSNQRPFNCEECGAGFVSNALLNVHVRSKHKGELVFTDLCSVCGKQCQSSTVLEIHMRSHTKERPFECNTCNKGFMSAGALKVHVRSHTGERPYVCSTCGKAFSTSQLLKVHNRIHTGERPYRCGVCERTFRQRCALRTHLKLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01530804;
- 90% Identity
- -
- 80% Identity
- -