Vnig000168.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- Prdm9
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000001.1:3284721-3292710[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.087 2.4 9.3 0.2 1 22 393 414 393 414 0.95 2 15 0.13 3.5 8.8 0.1 1 23 436 459 436 459 0.90 3 15 0.0022 0.061 14.3 7.5 1 23 475 497 475 497 0.98 4 15 0.0022 0.062 14.3 0.2 1 23 503 526 503 526 0.95 5 15 0.001 0.028 15.4 4.2 1 23 532 554 532 554 0.98 6 15 0.00024 0.0065 17.4 1.5 1 23 560 583 560 583 0.95 7 15 0.00011 0.0029 18.5 3.9 1 23 589 611 589 611 0.98 8 15 0.00046 0.013 16.5 2.5 1 23 617 640 617 640 0.98 9 15 7.8e-05 0.0021 18.9 5.6 1 23 646 668 646 668 0.98 10 15 0.027 0.75 10.9 0.2 1 23 674 697 674 697 0.93 11 15 0.00038 0.01 16.8 3.5 1 23 703 725 703 725 0.98 12 15 0.0017 0.047 14.7 1.1 1 23 731 754 731 754 0.95 13 15 0.00042 0.012 16.6 3.7 1 23 760 782 760 782 0.98 14 15 0.0015 0.041 14.9 0.5 1 23 788 811 788 811 0.96 15 15 7.6e-05 0.0021 19.0 4.4 1 23 817 839 817 839 0.98
Sequence Information
- Coding Sequence
- ATGGCTAGCATAGAACAGTACTTCGAGCCAGAAAAATGGGAGACTATGTCTGAATATGAAAAGAAACGACATCTAAACGTCTACGAAATTTATATTTCGATGAAAGAACTaggaATGCCATTACCAGTACCAGATTTTATGTCCAAATGTAAAGCAAAAACACCAGACGATTATATGTTCAAAATACCTGAAATCCCTCCCTTAAAGAAACCCGGAAATAAGAACTCCAATTCCAGTAAGAAGTTTCAATCACCGTCGAAAATTACTGCTGAGTATTCAGAGCAGGAGAAAATTACAAACAgcgaaaaaagtaaaaagaaacgaattagtgaaaaaaacattaaaaaaaattgcaaagaaTACGAAGAAATTGTTAATACATTTAAGAGTAATGGCGTAAAGGGTTTCACAAAAAAAGATGTCGACTACTCAAAACTAGAGTTTCTGACTGTCGAAGAGTTTCTCAACGAACTGTTGGAAACGATAAAAAACACCCCTAATTGCGCTAAATGCTGCAGCAAATCAACACCTTTGAAAACACCGAGTCGATATCCAAAACGTAAtgtcaaaaaagtaaattatgcTGAAACAGAAATCCGAGATGATTGCTATatctACTGCGACATTTGCGAGCGAGAGTACGAACAACCTGCAGATCATGGCGTTACATGTCCCGTACACGGATTACTGCCGAGATTATTCAACAAAAACGTCCCTAGGAACCCGAGAAATGTACAACGAGCTGAACGCACTTTACGCGAAGATTGGTTGGCCATCCGAACATCAAGCATCAAAGACGCTGGTTTAGGTGTTTGGAACATtaaatggttgccgattggtacCCTATTAGGCCCTTATGAAGGCGAAAAAACCAAACAAGGCAATGATAATGGTTACTGTTGGACGatTGTCGAAAAAGGGAAGGTGTCGCATTACATCGATGGGGAGAACGAAGGCGTATCGAATTGGTTGAGATATGTAAATTGCTCCCGTAATATATCCGAACAGAACTTGATGGCATTCCAATTCTTTGGAAAACTGTATTACCGAGTCGTTAAAGATATACCTCCCCACACAGAGCTATTGGTGTACTACGGTAACAAGTATGCGTCAAAACTCGGAAtcgatacaaaaaattattccaaACCGGCCGACAAGCCGTTTCCCAATGGCAGTTTTAAATGTTCCGGTTGCGTTTACAATTTTGCAAGTCCGCTATTTTTAGAAGAACACCAGAAACGATGCAGAAaatacagattttatttaataacttcaGAACAGAACGAAAAGCCTGACAACAAATTGCACAAATGCAAATTATGCGACTACGTCACGCCTGATTCGGAAGTCCTGTTGGCCCACGTAACTGCTGCACACAAAGACAAAGCAGGGAACAAAAAGCAGCACGAGTCAACCAAAGAGTTTGCGTGCGAACACTGCACTTACAAAACCAGTCACAGTGGTCACTTAAAAAACCACCTACGCACGCATTCTGGCGAAAAACCGTATAGGTGTGACGAATGTCAGAGTGCATTTTCGCAATACGGCAGTCTTTTAAACCATGTAAAGGCCGTACACAATCAATTAAAAGATTATGCTTGCGAACATTGCACTTACAAAACCAGTTACAGTACTAGCTTAAAAAACCACCTACGCACCCACTCCGGCGAAAAACCGTATAGGTGTGACGAATGTCAGAGTACATTTTCGCAATCCGGCCATCTTTTTAACCATGTAAAGGCCATACATAAGCAACTAAGAGATTATGCTTGCGAACATTGCACTTACAAAACCAGTAACAGTACTAACTTAAAAAACCACCTACGCACGCATTCTGGCGAAAAACCTTATAAGTGTGACAAATGTCAGAGTGCATTTTCGCATTCCGGTACTCTTTTTAACCATGTAAAGACCGTACATAAACAATTGAAAGATTATGCGTGCGAACATTGCACTTACAAAACCAGTAGCAGTAGTCACTTAAAAGACCATATGCGCACGCATTCTGGCGAAAAATCGTATCAGTGTGACGAATGTCAGAGTGCATTTTCGCGATCCGACAATCCTTCCAAACATGTGAAGGCCGTGCACAAGCAATTAAAAGATTATGCGTGCGAACATTGCACTTACAAAACCAGTTACAGTACTAACTTAAAAATCCACCTACGCACGCATTCTGGCGAAAAATCGTATAGGTGTGACAAATGTCAGAGTACATTTTCGCTATCCAGCAGTCTTTTTAACCATGTAAAGGCCGTACATAAGCAATTAAAAGATTATGCGTGCGAACACTGCACTTACAAAACCAGTAAGAGTACTAACTTAAAAATCCACCTACGCACGCATTCTGGCGAAAAATCGTATCAGTGTGACAAATGTCAGAGTGCATTTTCGCAATTCGGCAGTCTTTCCAGACATGTGAAGGCCATACACGATCAATTAAAAGATTATGCGTGCGAACACTGCACTTACAAAACCAGTAACAGtactaacttaaaaaaacacctACGCACGCACTCTGGTGAAAAACCTTAG
- Protein Sequence
- MASIEQYFEPEKWETMSEYEKKRHLNVYEIYISMKELGMPLPVPDFMSKCKAKTPDDYMFKIPEIPPLKKPGNKNSNSSKKFQSPSKITAEYSEQEKITNSEKSKKKRISEKNIKKNCKEYEEIVNTFKSNGVKGFTKKDVDYSKLEFLTVEEFLNELLETIKNTPNCAKCCSKSTPLKTPSRYPKRNVKKVNYAETEIRDDCYIYCDICEREYEQPADHGVTCPVHGLLPRLFNKNVPRNPRNVQRAERTLREDWLAIRTSSIKDAGLGVWNIKWLPIGTLLGPYEGEKTKQGNDNGYCWTIVEKGKVSHYIDGENEGVSNWLRYVNCSRNISEQNLMAFQFFGKLYYRVVKDIPPHTELLVYYGNKYASKLGIDTKNYSKPADKPFPNGSFKCSGCVYNFASPLFLEEHQKRCRKYRFYLITSEQNEKPDNKLHKCKLCDYVTPDSEVLLAHVTAAHKDKAGNKKQHESTKEFACEHCTYKTSHSGHLKNHLRTHSGEKPYRCDECQSAFSQYGSLLNHVKAVHNQLKDYACEHCTYKTSYSTSLKNHLRTHSGEKPYRCDECQSTFSQSGHLFNHVKAIHKQLRDYACEHCTYKTSNSTNLKNHLRTHSGEKPYKCDKCQSAFSHSGTLFNHVKTVHKQLKDYACEHCTYKTSSSSHLKDHMRTHSGEKSYQCDECQSAFSRSDNPSKHVKAVHKQLKDYACEHCTYKTSYSTNLKIHLRTHSGEKSYRCDKCQSTFSLSSSLFNHVKAVHKQLKDYACEHCTYKTSKSTNLKIHLRTHSGEKSYQCDKCQSAFSQFGSLSRHVKAIHDQLKDYACEHCTYKTSNSTNLKKHLRTHSGEKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -