Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000021.1:2492280-2497329[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00018 0.0049 17.8 0.9 2 23 196 217 195 217 0.96

2 12 0.00022 0.0062 17.5 1.8 1 23 225 247 225 247 0.98

3 12 0.0017 0.046 14.7 1.0 1 23 253 275 253 275 0.98

4 12 0.00031 0.0087 17.0 0.3 2 23 281 302 280 302 0.97

5 12 0.0021 0.059 14.4 4.0 1 23 307 329 307 329 0.96

6 12 8.2e-05 0.0022 18.9 1.3 1 23 335 358 335 358 0.98

7 12 0.19 5.3 8.2 0.5 2 23 366 384 365 384 0.88

8 12 0.005 0.14 13.3 2.6 1 23 391 414 391 414 0.96

9 12 0.0003 0.0081 17.1 4.8 3 23 425 445 424 445 0.99

10 12 1.8e-06 5e-05 24.1 0.9 1 23 451 473 451 473 0.96

11 12 2.7e-06 7.4e-05 23.5 0.6 1 23 479 501 479 501 0.98

12 12 3.8e-06 0.0001 23.1 0.3 1 23 507 529 507 529 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00018	0.0049	17.8	0.9	2	23	196	217	195	217	0.96
2	12	0.00022	0.0062	17.5	1.8	1	23	225	247	225	247	0.98
3	12	0.0017	0.046	14.7	1.0	1	23	253	275	253	275	0.98
4	12	0.00031	0.0087	17.0	0.3	2	23	281	302	280	302	0.97
5	12	0.0021	0.059	14.4	4.0	1	23	307	329	307	329	0.96
6	12	8.2e-05	0.0022	18.9	1.3	1	23	335	358	335	358	0.98
7	12	0.19	5.3	8.2	0.5	2	23	366	384	365	384	0.88
8	12	0.005	0.14	13.3	2.6	1	23	391	414	391	414	0.96
9	12	0.0003	0.0081	17.1	4.8	3	23	425	445	424	445	0.99
10	12	1.8e-06	5e-05	24.1	0.9	1	23	451	473	451	473	0.96
11	12	2.7e-06	7.4e-05	23.5	0.6	1	23	479	501	479	501	0.98
12	12	3.8e-06	0.0001	23.1	0.3	1	23	507	529	507	529	0.98

Sequence Information

Coding Sequence: atgggcgatataaaatatgataatataaAGAACGAAAATGAAGACAACATAACCAAATCCGATTTTGAAAAGATATGCCGCActtgtttaaaagaaaaacaaaatatgacgcttgtttttaataatatggagGTTATAAGAATGTTACACACATGCACCAGAATCAagATTGGTTTAAATGATGGTTTGCCGTCGCATATTTGTTACGAATGTTCGTACGAAGTGGAAAAATCTTACAAGTTCAAACAAGAATGTGAAAAATCCGATCGCTTATTGCGAAGGATATTAAAGGAATACGAAGATAAGCAAGAAAATATAGAAGAAACTCCAGATACGTTAGGATGCAAAAGTGAGAAAGACAATTACTTAAGAAAAGAGGACTGCGACGATGACAGTGATAGAGATAATACAGATTTGATCGAAGATAACGCAGACGATGATTCATGGAGAAATGACGACGTTACGACTAGCGATGTCGAAATCGAAACTCAAAAAGACAAATCGTCAGATCCAAATAGAAATTCAAACGTGAATAAAAAACAGCCGTTAGTGTTCGATTCTGAAAAATGCGACGAACGGACTTGCACGTGCAAAATTTGTAACAAagttttagttaatatttattcattGGCTCGTCACATGGAAATGCACaacgaaaatcgtaaattttcgCATACGTGTCAAGTATGTAATAAAGGGTTCTATGAAAAAGGCCCGTTGACCAAACACATGCTTCGACATGAAGGCAAAACGCGGTACCATTGCGAAATTTGCAATAAAGGTTTTTACGAATTAAGCGCTCAAGCTGTCCACatgaaaaaacacaaaattaaaccaTCGCCGTGCGATATCTGCGGTAAGAAATTCATGGTTCGACTCCAGTTGGAAATCCATAGGAAAACGCACGAAGAACTAAAACATTTCTGTCCGACGTGCGGTAAAGGATTTCAGGTGATGCACTTACTAAAAAAACATCAACAGTCGCACATTAAAGAGACTCCGTTTACTTGTCAGAAGTGCGACGGTTCGTTTAAGAATGAAATCACTTTACGTAAACATATAAAACGCATACACGAAGGAATTAAGGACAAGGACGTGTGCAACGTTTGTGGGAAATCGGTTTATTATCTTAAGTATCACATGCTCAGGCATTACGGCGGGGACAGGCCTTATCCGTGCGAAGAATGTCAATTGTCTTTTCATCTCGAAAGTCACTTGACGCAGCACGTGTTACGAAAACATCGCGGCGAAAAAAGGGCGTGCACTGCGCTGTGCACCACTTGTGGCAAGGAGTGCCATTCTCAGAGTGACTTGCAAATACACATGCGCAAACATACAGGTGAACGACCGCACGCCTGTCAGTTGtgcgataaaaaatataaaactccaTCGGCTCTGGTAGTTCATATGAGAACTCACACGAACGAACGGCCTTACGTGTGCAGTACATGTGGCAAAGGTTTCTCGACTAGTACTGTGCTTAAAAAACACGTCCGAATTCATACTGGGGAACGGCCATATGTATGTCAGCTATGCGAGAGGGCGTTTACGCAACGCGAGGCGTTAAATACTCACATGAAAATACATTGA
Protein Sequence: MGDIKYDNIKNENEDNITKSDFEKICRTCLKEKQNMTLVFNNMEVIRMLHTCTRIKIGLNDGLPSHICYECSYEVEKSYKFKQECEKSDRLLRRILKEYEDKQENIEETPDTLGCKSEKDNYLRKEDCDDDSDRDNTDLIEDNADDDSWRNDDVTTSDVEIETQKDKSSDPNRNSNVNKKQPLVFDSEKCDERTCTCKICNKVLVNIYSLARHMEMHNENRKFSHTCQVCNKGFYEKGPLTKHMLRHEGKTRYHCEICNKGFYELSAQAVHMKKHKIKPSPCDICGKKFMVRLQLEIHRKTHEELKHFCPTCGKGFQVMHLLKKHQQSHIKETPFTCQKCDGSFKNEITLRKHIKRIHEGIKDKDVCNVCGKSVYYLKYHMLRHYGGDRPYPCEECQLSFHLESHLTQHVLRKHRGEKRACTALCTTCGKECHSQSDLQIHMRKHTGERPHACQLCDKKYKTPSALVVHMRTHTNERPYVCSTCGKGFSTSTVLKKHVRIHTGERPYVCQLCERAFTQREALNTHMKIH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01530871;
90% Identity: iTF_01530871;
80% Identity: -