Vnig007551.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
-
Assembly
GCA_034508555.1
Location
JAVRKA010000016.1:5979978-5997440[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 1.3e-05 0.00036 21.4 3.2 2 23 481 502 480 502 0.97
2 14 0.0024 0.066 14.3 8.0 1 23 508 530 508 530 0.96
3 14 0.00058 0.016 16.2 6.7 1 23 536 558 536 558 0.98
4 14 0.0025 0.07 14.2 6.9 1 23 564 586 564 586 0.99
5 14 1.4e-05 0.00038 21.3 0.6 1 23 1563 1585 1563 1585 0.98
6 14 0.00047 0.013 16.5 5.6 1 23 1591 1613 1591 1613 0.98
7 14 5.9e-06 0.00016 22.5 4.3 1 23 1619 1641 1619 1641 0.99
8 14 0.0012 0.032 15.3 2.9 1 23 1647 1669 1647 1669 0.98
9 14 0.0016 0.043 14.8 1.7 1 23 1675 1698 1675 1698 0.98
10 14 6.3e-07 1.7e-05 25.5 3.7 1 23 1704 1726 1704 1726 0.99
11 14 1e-06 2.8e-05 24.8 3.1 1 23 1732 1754 1732 1754 0.99
12 14 0.0005 0.014 16.4 1.4 1 23 1760 1782 1760 1782 0.97
13 14 0.0001 0.0028 18.6 1.0 1 23 1788 1810 1788 1810 0.99
14 14 0.68 19 6.5 1.5 3 21 1818 1836 1816 1837 0.93

Sequence Information

Coding Sequence
ATGAAAGAAATATCTATAACTGGCTTTGACCTAAGCACAATGTGTCGATTGTGCTTATCAAGTGATGTTACGTTACTAGACTTGTTTTCATATTCGTCTAAATTTGGGAAGCTTGTGGTTAACGCAGTCATGGAGTGTGCTCCCGTTCAGATAAGAAGGGGTGATGAGATGccaaattttatttgtcaaaaatgtCACACTAGACTGGAAAAAACTTATCAGTTCCAGATGCAAATAATAGAGTCTGAGAAAACTCTGCAACGCTATTTAGAGCAATTACATGCTTTTGACAAAAATCctaaccttaaaaattcaattcagaGGCCGTTTGAGATCGACAACACAAGCATCTCTGATAAGTGTGAATCTGTGGAACTCCATAGCATGATTGACTTGAATGTCAACCGGAGAGAGAAAGAATATGAAAATTCGAATTCAGCAAGCAAAATTAACAAAGAATTGCCATTGAAATCCGAAATGAAAGACGAGCAAGACAATTCAATTATCTCATCAAACTGTGCCGAGGACAGCGTAGaaactttttgtaaaaatgttgaGGATTCATTTATCAACATTGGTGACAGTAAATTGATGGAAGAACCTGCAAATTGTACCTCGGCATGCAAAAGTATTGAAAAAACGTctttaaaatccgaaatcaaagATGAACCAACGAACGACGACTCATTAATTCTGATGGAATTTACTGACGACACTAATGGAGTTTGCGAAATTAGCAGCGAAGACACAAATGTCGGTTTTGATCACATGTCTGGAAAATCCACATATCTTCTTTCTTCTAATATGGGAGAgaattgtgtaaaatttcaagaaaaaattattaataacccaAGCAATATTAACATAGAAATGCCTTTGAAATCCGAAATAAAAGACGGGCAAGACAATTCAATTATCTCATCAGACTGTGCCGATAACATAGTAGAAACTTTTTCTGAGGATGTTGAGGAATCATTTATCAGCATTGGCGACAGTAAATTGATAGAAGAGATGGATGTTAAATGGAAAGTGGAAAAAGCCGCAAATTTTAACTCGTGCAAAAGTATTGAGGATATGTCTCTAAAATCCAAAATCAAAGATGAACCGACCGATAACGGTTCATTAATTCTAACGGAATTTCCTGATGACACAGTAAACGATTTTTCTGACGGAGTTACCGAAATCAGTTGCGAAGACACAAAGGTCGGTTTTGACCACATATCAGGAAACTCCGCATATCTTCGGTTTTCTGAATTGggagaatattttcaaaaatttgaagaaaGAATTGAAAATTCCTCAATAGACCCTGAGACTAACAAAAAAGCCATTGATGCCAAATCGCATCAGATTAAAATTAAGGACACGTGTAAAAAACGTCACATTAAATCGCACATTTTAGAAACTTACAAGAATGCAAGTACTAGTAAGAAATTAAagcagtgtgacatttgtaaaaagtgttttgcCACAAAGTCCAATTTAAATGCTCACAAACAGATACATACTCGCGAGAAACCATACcattgtgacgtttgtaaaaagtgtttcactcgttcaaagtatttaaataaacacaaactgctacatactggtgagaaaccataccagtgtgacatttgtaaaaagtgtttcacttaTTCAAGCTGTTTAAAttctcacaaactgatacatacggGCAAAAAACCctatcaatgtgacatttgtaaaaactgttttactcaTTCAAGCACATTATATACACACAAacggatacatactgAGCAATTACATGCTTTTGACAGAAAACAGAAGCCCCAGAATTCTATCCAGAGTCCGACTGAGGATCCTTTGATCGAAAACACTAATGCAGACATTACTGAGAAGTATGAATCTTTGGAATTCCATGACGTGGTTGACTCGAACGTCAACTGGAGAGAGAAAGAATATGAAAATTCGAATTCAGCAAGCAAAATTAACAttgaaatgtctttaaaatccgAAATGAAAGAAGAGCAAGATAATTCAATTATTTCACCAAACAGTCCCGATGACAGCGTAAAAACTTTTTCTAAGGATGCTGAGGAATCATTTATCAATATTGGCGACAGTAAATTGATGAAAGACATGTATTTCAATGGGAAAGTAGATGAATTTGCAAAATTTACCTCGGCATGCAACAGTATTGAggaaatgtctttaaaatccgaaatcaaaAATGAACCGACAGACAACGGTTCATTAATTCTGACGAAATTTTCTGATGACACAGTAAGCGATTTTTCTAATGGAGTAAGCGAAATCAGCTGCGAGGACAAAAAGATCGGTTTTGGCTTCATATCAGAAAACTCCACGTATCTTCGTTCTTCTGATGTGGGAGAGCATTGtgaaaaatttgaagaaaaactcAATATCTCAATGGATCGTGAGACGCCCAAAAAAAGCCCATCAGAGGATCCTTCGATCGATAATACTAATGCAGACATCATTGAGAAGTGTGAATCTTTGGAACTTCATGGCGTGGTTGATTTGAATGTCAACTGGAGAGAGAAAGAATACGAAAATTCGAATTCAGTAAGCAAAATTAGCAttaaaatgtctttaaaattcGAAATGAAAGACGAGGAAGATAATTCAATTATCTCACCAGACTGTGCCGATGACAGCGTAGAAATTTTTTCTAAGGATGTTGAGGAATCATTTATCAATATGGGCGACAGTAAATTGATAGAAGGGATGGATGTTAAGTGGAAATTAGAAGATCCTGCAAATTTTGCCTCGGCAAGCGGAAGTATTGAGGAAATGTCTTTTAAATCCGAAATCAAAGATGAACCGACGGATAACGATTCATTAATTCTAACGGAATTTCCTGATGAGACAGTAAACGAATTTTCTGACGGAGTTAGCGAAATCAGCTGCGAAGACACAAAGatAAGAAGTGGTGATGAGATGCCCAActtcatctgtcaaaaatgtCTCACTACCCTGGAAAAAGCTTATCAGTTCCAGACGCAAATAATAGAGTCTGAGAAAACTTTGCAACGCTATTTAGGGCAATTACATGCTTTCGACAAAAAACCGAAACCCGAGAATTCCATTCAGAATACGGCAGAGCACCCTTTGATCGAAAACACTAATGCAGACATCACTGAGAAGTGTGAATCTTTGGAACTTCATGGCGTGGTTGACTTGAATGTCAACTGGAGAGAGAAAGACTACGAAAATTCGGATTCAGCAAGccaaattaacattgaaaagtCTTTAAAATCCGAAGTGAAAGACGAGGAAGATAATTCAATTAATTCACCAGACTGTGCCGATGACAGCGTAGAAACTTTTTCAAGGGATGCTGAGGAATCATTTATTCAAATTGGCGACAGTAAATTGATGGAAGACATGAATTTTAACTGGAAAGTGGATGAATCTGCAAAATTTACCTCGGCATGCAACAGTACTGAGGAAGCGTctttaaaatccgaaatcaaagATGAACCAACGAACGACGACTCATTAATTCTGATGGAATTTACTGATGACACAGTAAGCGATATTTCTAATGGAGTAAGCGAAATCAGCTGCGAAGACACAAAGATCGGTTTTGGCCTCATTTCGGAAAACTCCATAAATCGTCGTTCTTCTCATGTGGAAGAGCATTGtgaaaaatttgaagaaataattaaaaatgcccTGACGGATCGTGAGCCGCGCCAAGAAACCAAAGTAAAATCTCATCAGTTTAAGATTAAAGAAACGTGTAAAAAACGTTACGTTAAATCGCGCTTTTTAGAAACTCACAAGAGTGCACGTACGATGTGGATGTTTGAATATATCGcaagaaatataaatacaatgcAAAAAATTCCGGTAACTAGTTTAGACTTGGCTGCAATATGCCGATTGTGCATGGCAAAGGAAGTTTCGATGTTGGATGTGTTTGAATTTTCAACCATATTAGAAAATCGAATCGTCGATGTAATCATGAAGTGTGCCCCCGTTCAAATAAGTAGATGCGATGATATGCCGAAATTCATCTGCCAGTTATGTTGTACCCAACTGGAGAAAACACACCAGTTCCAGACGCAAATCATACAGTCTGACAAAACACTACGACGCTATTTACAGCAACTGCATGTTTCTGACGAACAAGCCATGCTCGAGTGTTCCATTCAGAAGCCGTCTGAGGATTCTTTAATCGATAAACCAGACGTCAAGTTTGAATCTTTGGAAAATAGTAACGTTTTATCGAAAATAAAAGTCGAACAAATGGATGATAATTTAGTAATGATTCCACCAGACAGTGTCGATGAAATTATATCTAAAAGTGGTGAAAGCTCTAGCGTAAATACTAGGGACAGCAATTTAATTGAAGATATGAATGTCAACTGGAAAATGGAAGAACCAGAAAATGTTAATTCAGCGTGGAAAAGTATTGAGGAAATATTTGTTAAACCAGAAATCAAAAACGAACCGATAGATGACAGCCCATTAATTCTGCCAGAATGTATTGATGACCCCGTTACTGATTTTTCTAAAGGTCACACGTCGGTGAACGATATAAATGTTCATTCTATTGATGTCGGAGCCAATCGTGAGAAGAGCAAGAATACTGTGGTAAAACGCGAAACACTTAAACAGACAAATGAAGTGAAATCTCCTTCTGAAGGAAGTCTCAAAAAATCCAAACACCGTCATGGTGCAAAGAAAACGTACGAGTGTGCCATTTGTAATAAACGTTTCACTCAAGCAAGTTCTTTAAGTGTCCACAAACGcttacatactggtgagaaaccgtatcaatgtgacatttgtaaaaagcgtTTTACACAACACAGTGTTTTAAGAAGGCACAAGTTTACACATTCTGATGAAAAGCtctaccagtgtgacatttgtaacaAGTGCTACACTCGATCGAGTTCTTTAAGTGTACACAAACGCACCcacactggtgagaaaccgtttcaatgtgacgtttgtaatatgTGTTTTGCTCAACAAAGTGTTTTGAGTAGACACAAATATACACATACTGACGAGAGACCGTATCAGTGTAACATTTGTAAGAAGAGTTTCGCCgcatttttgaatttgaaatatcaTACACGTATTAAGCATACTGGTGAAAACCCGTATCAGTGTGAAATTTGTCAGAAAACTTTCTCACACCCAAGCAATTTGAAAACTCACAATCGTACGCACACTGGTGAGAAACCCTACCAGTGCGACATTTGTAATAAGCGTTTCACTCATTCAGGCACTTTGAAGTTACACATTCGTacgcatactggtgagaaaccctACCAATGTGACGTTTGCAGTGAAAGTTTCGCTCGATCAAGCAACTTAAAGTTCCACAAGCGCCTACATAAGGGTGGGGTATCTtatcagtgtgatatttgtaacaAGTATTTGTCCAATCGGGATCGATTGAATAATCATATACGGATGCATAATGTTGATAAATTTTTCGGTTGTGACGTTTGTAATCAGTATTTCGTCGATAATAGGAGATTGAAAAAACATAAGTGTGTGCCTACTGAAGAGAAAccataa
Protein Sequence
MKEISITGFDLSTMCRLCLSSDVTLLDLFSYSSKFGKLVVNAVMECAPVQIRRGDEMPNFICQKCHTRLEKTYQFQMQIIESEKTLQRYLEQLHAFDKNPNLKNSIQRPFEIDNTSISDKCESVELHSMIDLNVNRREKEYENSNSASKINKELPLKSEMKDEQDNSIISSNCAEDSVETFCKNVEDSFINIGDSKLMEEPANCTSACKSIEKTSLKSEIKDEPTNDDSLILMEFTDDTNGVCEISSEDTNVGFDHMSGKSTYLLSSNMGENCVKFQEKIINNPSNINIEMPLKSEIKDGQDNSIISSDCADNIVETFSEDVEESFISIGDSKLIEEMDVKWKVEKAANFNSCKSIEDMSLKSKIKDEPTDNGSLILTEFPDDTVNDFSDGVTEISCEDTKVGFDHISGNSAYLRFSELGEYFQKFEERIENSSIDPETNKKAIDAKSHQIKIKDTCKKRHIKSHILETYKNASTSKKLKQCDICKKCFATKSNLNAHKQIHTREKPYHCDVCKKCFTRSKYLNKHKLLHTGEKPYQCDICKKCFTYSSCLNSHKLIHTGKKPYQCDICKNCFTHSSTLYTHKRIHTEQLHAFDRKQKPQNSIQSPTEDPLIENTNADITEKYESLEFHDVVDSNVNWREKEYENSNSASKINIEMSLKSEMKEEQDNSIISPNSPDDSVKTFSKDAEESFINIGDSKLMKDMYFNGKVDEFAKFTSACNSIEEMSLKSEIKNEPTDNGSLILTKFSDDTVSDFSNGVSEISCEDKKIGFGFISENSTYLRSSDVGEHCEKFEEKLNISMDRETPKKSPSEDPSIDNTNADIIEKCESLELHGVVDLNVNWREKEYENSNSVSKISIKMSLKFEMKDEEDNSIISPDCADDSVEIFSKDVEESFINMGDSKLIEGMDVKWKLEDPANFASASGSIEEMSFKSEIKDEPTDNDSLILTEFPDETVNEFSDGVSEISCEDTKIRSGDEMPNFICQKCLTTLEKAYQFQTQIIESEKTLQRYLGQLHAFDKKPKPENSIQNTAEHPLIENTNADITEKCESLELHGVVDLNVNWREKDYENSDSASQINIEKSLKSEVKDEEDNSINSPDCADDSVETFSRDAEESFIQIGDSKLMEDMNFNWKVDESAKFTSACNSTEEASLKSEIKDEPTNDDSLILMEFTDDTVSDISNGVSEISCEDTKIGFGLISENSINRRSSHVEEHCEKFEEIIKNALTDREPRQETKVKSHQFKIKETCKKRYVKSRFLETHKSARTMWMFEYIARNINTMQKIPVTSLDLAAICRLCMAKEVSMLDVFEFSTILENRIVDVIMKCAPVQISRCDDMPKFICQLCCTQLEKTHQFQTQIIQSDKTLRRYLQQLHVSDEQAMLECSIQKPSEDSLIDKPDVKFESLENSNVLSKIKVEQMDDNLVMIPPDSVDEIISKSGESSSVNTRDSNLIEDMNVNWKMEEPENVNSAWKSIEEIFVKPEIKNEPIDDSPLILPECIDDPVTDFSKGHTSVNDINVHSIDVGANREKSKNTVVKRETLKQTNEVKSPSEGSLKKSKHRHGAKKTYECAICNKRFTQASSLSVHKRLHTGEKPYQCDICKKRFTQHSVLRRHKFTHSDEKLYQCDICNKCYTRSSSLSVHKRTHTGEKPFQCDVCNMCFAQQSVLSRHKYTHTDERPYQCNICKKSFAAFLNLKYHTRIKHTGENPYQCEICQKTFSHPSNLKTHNRTHTGEKPYQCDICNKRFTHSGTLKLHIRTHTGEKPYQCDVCSESFARSSNLKFHKRLHKGGVSYQCDICNKYLSNRDRLNNHIRMHNVDKFFGCDVCNQYFVDNRRLKKHKCVPTEEKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-