Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000069.1:560495-562535[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0095 0.26 12.4 2.7 1 23 219 241 219 241 0.97

2 10 1.8e-05 0.0005 20.9 2.1 2 23 255 276 254 276 0.97

3 10 4.9e-06 0.00013 22.7 1.0 1 23 298 320 298 320 0.99

4 10 8.7e-06 0.00024 21.9 3.6 1 23 326 348 326 348 0.98

5 10 1.5e-06 4.2e-05 24.3 1.8 1 23 365 387 365 387 0.97

6 10 0.00043 0.012 16.6 1.6 1 23 398 420 398 420 0.97

7 10 2.3e-06 6.2e-05 23.8 5.6 1 23 426 448 426 448 0.98

8 10 3.8e-05 0.001 19.9 2.8 1 23 467 489 467 489 0.98

9 10 1.4e-05 0.00038 21.3 5.8 1 23 495 517 495 517 0.98

10 10 2.7e-06 7.4e-05 23.5 5.1 1 23 537 559 537 559 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0095	0.26	12.4	2.7	1	23	219	241	219	241	0.97
2	10	1.8e-05	0.0005	20.9	2.1	2	23	255	276	254	276	0.97
3	10	4.9e-06	0.00013	22.7	1.0	1	23	298	320	298	320	0.99
4	10	8.7e-06	0.00024	21.9	3.6	1	23	326	348	326	348	0.98
5	10	1.5e-06	4.2e-05	24.3	1.8	1	23	365	387	365	387	0.97
6	10	0.00043	0.012	16.6	1.6	1	23	398	420	398	420	0.97
7	10	2.3e-06	6.2e-05	23.8	5.6	1	23	426	448	426	448	0.98
8	10	3.8e-05	0.001	19.9	2.8	1	23	467	489	467	489	0.98
9	10	1.4e-05	0.00038	21.3	5.8	1	23	495	517	495	517	0.98
10	10	2.7e-06	7.4e-05	23.5	5.1	1	23	537	559	537	559	0.98

Sequence Information

Coding Sequence: atgaaaactgtaataattGGAGACCACGATTTAAATAGTTTGTGTAGGCTTTGTCTAAATACAAACGCAATACTAGTGGATTTATTTACATTCTCCGCTGAACTGAACGATAAGATTGTGGATACGCTCATGAAATGCGCTCCTATTCACgtaaataaaaatgataaactaCCAAAAAGTATATGTAAGGCATGTTATGCTCAATTGAAAATTGTGCACAAGTTTCAAATGGAAGCTGTCCAGTCTGAAAAAGCTCTTTATCGATATTTGAAATCACGCGAATCTGAAGTGGACAATAACGAAAATCAAGGGTCGTCAGACGATATTGAAGACTACATAAAACTTGAGTTTTCAAACGAAGTTCCAAATTATCAAACCAAGATTAAGCAAGAAGTTGATGATGAAATAATAAACACAAGAATCATAAGATCCGATAAATCACTTGAGGATTCTGCACTCTACGATAAAACAAACTGTAATATAAAACGAGAAATCTTTCGAAATGATGATGAGGACGACTTGGATAGTTTTACTGATGACATTCCGATCCAAAAATCGGATGATGTATCATTTTGCAACATTGTAGAGAATACCTTAAAAAGAAGCGATTCTGAAATTAATTTAGCTGAACTGTTAAGCAGTGATTTTAAGCCCCATCAATGTAATATTTGCGAAATGCGATTCGAGCGCGATGTTGAACTGACAAATCACAAACATGTACATACTGATGAAAGTTCAATGACACGGAAAGCATCAAACATCCGATGTGAACTTTGCAATAAAACCTTCACTAAACTGTATCATTTAAAATGGCATGCTAGAGTACATGCCCGCAATTTGACTGTTAATTTAAAACGTACAGCTAAACGATTTCAAATCGATGACAAATCTTTTCAATGTAACGTTTGCAGTAAAATGTTTGCTCGGTTATACGATTTTAATATCCACCAACGAGttcataccggtgagaaacctcACAAATGCGATCTTTGCGGAAGACGTTTCAATGATCCAAGCAACATGAGGAAACACAAACGAAACCATCCCGCTCTTACTCCGAAACAGAATCAGACCGACGATAAAACAAAACAGCACGAATGTAATATTTGCAGCAAGAGATTCAGCGATCCggcaaatttggagaaacataAACGAAATCATCCTCTGGTATACGATCAACAAAAACCGCACCATCAATGTGACGTCTGCAACAAACTGTTCGCCCGCATGTATgacttgaaaatacataaacgtgcgcatactggtgagaaacctcatcagtgtgacgtttgcggCAAATGCTTTAACGATCCAAGTAATATGAGAAAGCATAAACGGAAACATCCCCCGCTGGCGAAAAATTCACAGAACAAAGAAGTGCCGTTCGGGAATAAACCCCACGAGTGTGAAGTTTGCAACAAGAGATTTGCAAGAATGTATGATTTGAAAGTACACAAACGTcgacatactggtgaaaaaccacaCCAGTGTGATATTTGCGGCAAATGTTTCAGCGAGTCTGGTAATATGAAGAAACATAAGAGAAAACATCCATCGGAAATGTCTCAATCGCCACAACAGAAACATATACGTACTGGTGATAAACCTCATCAATGTGATGTTTGCGGAAAGTGTTTTAATGATCCGAGCAACATGAAGCGCCATAAACGTCAGCATACATTAACCGGCGATGGAACTATGGAAGTTAAGAAAACTGAAAGAAGAAGGCGCGTTCTTTCGAAAAAGAccaaaatagaataa
Protein Sequence: MKTVIIGDHDLNSLCRLCLNTNAILVDLFTFSAELNDKIVDTLMKCAPIHVNKNDKLPKSICKACYAQLKIVHKFQMEAVQSEKALYRYLKSRESEVDNNENQGSSDDIEDYIKLEFSNEVPNYQTKIKQEVDDEIINTRIIRSDKSLEDSALYDKTNCNIKREIFRNDDEDDLDSFTDDIPIQKSDDVSFCNIVENTLKRSDSEINLAELLSSDFKPHQCNICEMRFERDVELTNHKHVHTDESSMTRKASNIRCELCNKTFTKLYHLKWHARVHARNLTVNLKRTAKRFQIDDKSFQCNVCSKMFARLYDFNIHQRVHTGEKPHKCDLCGRRFNDPSNMRKHKRNHPALTPKQNQTDDKTKQHECNICSKRFSDPANLEKHKRNHPLVYDQQKPHHQCDVCNKLFARMYDLKIHKRAHTGEKPHQCDVCGKCFNDPSNMRKHKRKHPPLAKNSQNKEVPFGNKPHECEVCNKRFARMYDLKVHKRRHTGEKPHQCDICGKCFSESGNMKKHKRKHPSEMSQSPQQKHIRTGDKPHQCDVCGKCFNDPSNMKRHKRQHTLTGDGTMEVKKTERRRRVLSKKTKIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01530772;
90% Identity: -
80% Identity: -