Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000074.1:69623-71678[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0016 0.044 14.8 2.8 1 23 163 185 163 185 0.96

2 11 0.034 0.92 10.6 2.2 1 23 191 213 191 213 0.97

3 11 0.00012 0.0033 18.3 4.4 1 23 251 273 251 273 0.98

4 11 3.8e-06 0.0001 23.1 1.7 2 23 278 299 277 299 0.96

5 11 2.6e-06 7.1e-05 23.6 4.3 1 23 305 327 305 327 0.98

6 11 4.5e-06 0.00012 22.8 0.5 1 23 333 355 333 355 0.95

7 11 0.00033 0.0091 17.0 0.4 1 23 361 383 361 383 0.97

8 11 0.0013 0.037 15.1 0.0 1 23 389 412 389 412 0.95

9 11 0.00048 0.013 16.4 7.3 1 23 418 440 418 440 0.99

10 11 1.2e-05 0.00032 21.5 2.7 1 23 446 468 446 468 0.99

11 11 4.1e-05 0.0011 19.8 0.2 1 23 474 496 474 496 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0016	0.044	14.8	2.8	1	23	163	185	163	185	0.96
2	11	0.034	0.92	10.6	2.2	1	23	191	213	191	213	0.97
3	11	0.00012	0.0033	18.3	4.4	1	23	251	273	251	273	0.98
4	11	3.8e-06	0.0001	23.1	1.7	2	23	278	299	277	299	0.96
5	11	2.6e-06	7.1e-05	23.6	4.3	1	23	305	327	305	327	0.98
6	11	4.5e-06	0.00012	22.8	0.5	1	23	333	355	333	355	0.95
7	11	0.00033	0.0091	17.0	0.4	1	23	361	383	361	383	0.97
8	11	0.0013	0.037	15.1	0.0	1	23	389	412	389	412	0.95
9	11	0.00048	0.013	16.4	7.3	1	23	418	440	418	440	0.99
10	11	1.2e-05	0.00032	21.5	2.7	1	23	446	468	446	468	0.99
11	11	4.1e-05	0.0011	19.8	0.2	1	23	474	496	474	496	0.98

Sequence Information

Coding Sequence: ATGgaatttgaaattaatgaaaGTTGCGAAAATATATGTCGATCTTGTTTAGCAGAGAATGTTGTAATGAATTcaatattttgtgaaacttCGTTAAATAGCGACTCCAACTTAATTTCTCAAATGATAATGGCGTGCGCTTCCGTTCAGGTATCAAAAAATGATGGTTTACCAGAACAGGTTTGCTTACAATGTATCGACGATATTAATAGAGCTTAtgcatttaaaacaaaatgtgaaAAAGCGGATTCAGTATTACGGAAACGATTTAAAGGTGATAAATTACTAATACCCAAAGTAGAAAATGAAGCAGACGACAATAACGAAATGTCAACAGAAATATTGATTAAACCTGAACTTAAAACCGATGCAGATTTGTATTCAAACGACGATTTTGCATCACGCGATAGCTTTACTGGTTCAGAATCACTAAAACCTCTGAAAGATTTAATTTTGGATGGGAAAACAAGTGAAGTCAATGAAAATCACAAATGCACTGTTTGCGAAAAAACATTCCAAAACACAGACTTCTTGATCAAACATTTGGATAATCATATGAATAACAAAGAACACGAATGCGAAATATGCTTTAAGGGATTTTATAAAACCGAGTCTTGGATACGCCACAAAAGTTCACACAGGTCAAAATTAGAAAACATGAAAGAAAATGATAAATTGATCaacataaaaaaacgtaaattaaaGACGAATAAGAAAACACCAAAAGATATCGTTGAGAAGCAGAAAACATTTAGTTGTGAGTTTTGTGATCAAGAATTCAATAAATCAAGTCATTTAACTTATCATTTAAAAACGCACGCTGAAGAACTGAGCTGTGGtaaatgtaataaaagtttCACGAGTGAAGGCAAATTGAAGAAACACATGAATTCGCACGTAGCTGTTCTAAAACATGTTTGTAACATTTGTCACAAAGCTTTCAAACAAATTAGCAATCTCAAGAGTCATTTAAGATCTCACAACGAAGAGAAACCGTTTTTGTGTTCAACGTGCGGCAAAGGTTTCAGTCAAGTTGGCAACCTTCAACAACACATGTTACGTCACACAGGTATAAAAGCTCACATATGCAACGTATGCGGAAATGGATTCGTGAGCAAAGGCGAACTCGTGACTCATTCACGAACTCATTCCGGAGTTCGGCCGTATATTTGCGATGTTTGCAGCGCCGATTTCCCGCGAGCTGATTCTTTGAGGAAACACAAAGAAGTCGTTCATTTGGGCCGGCGCCCGTATGAATGCGATGTGTGCCATTCGACGTTCTCAAGGCCACATCACGTTACTCGCCACAAACGTACgcatactggagagaaaccgtaccgaTGTAGATTCTGTTTCAAAACGTTCacgcaaaataaaaatctcgTAGAACATATTagaatacatactggtgagaaaccctATGTCTGCGATGTTTGTGGAAAAGGATTTACGCAAGGATCACCGCTCAAAACGCATAAAAAGATACATTTGAAGAAAATCAGCTCgtatgtagaaaataatattgccGTTCCGGCAAATTTAGAATAA
Protein Sequence: MEFEINESCENICRSCLAENVVMNSIFCETSLNSDSNLISQMIMACASVQVSKNDGLPEQVCLQCIDDINRAYAFKTKCEKADSVLRKRFKGDKLLIPKVENEADDNNEMSTEILIKPELKTDADLYSNDDFASRDSFTGSESLKPLKDLILDGKTSEVNENHKCTVCEKTFQNTDFLIKHLDNHMNNKEHECEICFKGFYKTESWIRHKSSHRSKLENMKENDKLINIKKRKLKTNKKTPKDIVEKQKTFSCEFCDQEFNKSSHLTYHLKTHAEELSCGKCNKSFTSEGKLKKHMNSHVAVLKHVCNICHKAFKQISNLKSHLRSHNEEKPFLCSTCGKGFSQVGNLQQHMLRHTGIKAHICNVCGNGFVSKGELVTHSRTHSGVRPYICDVCSADFPRADSLRKHKEVVHLGRRPYECDVCHSTFSRPHHVTRHKRTHTGEKPYRCRFCFKTFTQNKNLVEHIRIHTGEKPYVCDVCGKGFTQGSPLKTHKKIHLKKISSYVENNIAVPANLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01530831;
90% Identity: iTF_01530831;
80% Identity: -