Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000014.1:4354035-4356001[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.26 7.3 7.8 5.1 1 21 173 193 173 194 0.93

2 14 0.0023 0.064 14.3 3.5 1 21 210 230 210 231 0.94

3 14 0.00088 0.024 15.6 5.3 2 21 246 265 245 266 0.93

4 14 0.00069 0.019 16.0 5.8 2 23 270 291 269 291 0.97

5 14 0.00011 0.0031 18.4 2.1 1 23 297 319 297 319 0.96

6 14 0.00016 0.0044 18.0 1.7 2 23 326 347 325 347 0.97

7 14 3.7e-05 0.001 20.0 8.1 1 23 353 375 353 375 0.98

8 14 2.9e-05 0.0008 20.3 0.6 1 23 381 403 381 403 0.99

9 14 0.00013 0.0036 18.2 1.5 1 23 409 431 409 431 0.97

10 14 0.00026 0.0072 17.3 3.9 1 23 437 459 437 459 0.98

11 14 0.0042 0.11 13.5 1.9 1 23 465 487 465 487 0.98

12 14 5.3e-05 0.0015 19.4 1.5 1 23 493 515 493 515 0.98

13 14 0.068 1.9 9.7 5.6 1 23 521 543 521 543 0.96

14 14 6.3e-07 1.7e-05 25.5 2.5 1 23 551 574 551 574 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.26	7.3	7.8	5.1	1	21	173	193	173	194	0.93
2	14	0.0023	0.064	14.3	3.5	1	21	210	230	210	231	0.94
3	14	0.00088	0.024	15.6	5.3	2	21	246	265	245	266	0.93
4	14	0.00069	0.019	16.0	5.8	2	23	270	291	269	291	0.97
5	14	0.00011	0.0031	18.4	2.1	1	23	297	319	297	319	0.96
6	14	0.00016	0.0044	18.0	1.7	2	23	326	347	325	347	0.97
7	14	3.7e-05	0.001	20.0	8.1	1	23	353	375	353	375	0.98
8	14	2.9e-05	0.0008	20.3	0.6	1	23	381	403	381	403	0.99
9	14	0.00013	0.0036	18.2	1.5	1	23	409	431	409	431	0.97
10	14	0.00026	0.0072	17.3	3.9	1	23	437	459	437	459	0.98
11	14	0.0042	0.11	13.5	1.9	1	23	465	487	465	487	0.98
12	14	5.3e-05	0.0015	19.4	1.5	1	23	493	515	493	515	0.98
13	14	0.068	1.9	9.7	5.6	1	23	521	543	521	543	0.96
14	14	6.3e-07	1.7e-05	25.5	2.5	1	23	551	574	551	574	0.97

Sequence Information

Coding Sequence: ATGGAAACAATAGTATCTGATTTCGATTTCACCAAGCTGTGTCGATTATGTTTAATTGAAGATGCTACTTTAATTGATTTGTTCGACTTTTCTTCAGAAATGGGCTGTCAAATTGTTGACGTGCTATTGAAATGTGCTCCCGTTaatGTAACAAGAGACGATCAGTTACCAAAATTCATCTGTCAAGAATGCAACACCGAACTAGAAAAAATAAACCAGTTTCAAATCAAAATAGTTGAATCAGAAAAAACTCTACTGCAGTGTTTGAAACTCCGAATCAATAATTTTGATCAAGTTCCTGAAAATTTCGACTTCGTCGATATCTGCACCGATATTAAAAGTGAGgaaaaagaattgaaaaataatttttgggaaATGGATTTACCACTGGACGTAAATATAACTAATGAAGacttcacttcaaaaatgacaTCTGAAAATAACACTGACACAAAACCATATTTACAAAATGACAATAGTTCTGAAAtcaatacaaaaatcaaaattgaaggTATGCACCAATGCACTgcatgtgaaaaaaaatttgaaacaaaaaaacgttTACAAAATCATAAATGCAGTGAAAATAtggacaaaaattcaaaaagtctTTCGCCTCTTCCTGTCTATTCATGCACGGAATGCAAAAAACAATTCAAACGTGAAACACAACTGCTAGCTCACAAATGTAAAGTAAACGAAAAACAAGAAACAGACGACGTAAATCATAACTTACAGTGTAGCGATtgtgaaaagcatttcaaaagaaaatcCTTGCTTCAAACTCATAAATGTAAGCGAAGATTGTATTGTAAATTCTGtaacaaaaacttttcaatGCTGTGTAATTTCGAGCGTCACATGAGGAGACATACCGGCGAGAAGCCCTATCTCTGTGAAGTTTGTAGCAAAAGTTTTGCCGATTTAGGTTATTTCAAGCATCACTTAAAAACACATATCGACGACAAGCCATTAGAATGTAACGTTTGCAAAAAACGTTTCAAATtcgtcaaaaatttaaatatccaTAAACGTGTTCACTCCGGTGCACGACCGTAtcgatgtgacgtttgtaataaaacatTCAGACAAACGCATCATTTGAAGCGTCACAAACGTCTACATACTGGTGAAAGGCCTTACGTCTGTAACATTTGCGATAAGAGTTTCATCCAGTCTGTAATCTTGACGCAACATAAACGCACGCATACCGGAGAGAAACCTTTTCAGTGTGAAATTTGTGACATGCGCTTCTCACAGTCAAACAGttacaaaatacataaacagTTGCATGCCGATGAAAATTCGCATAAATGTGAAATATGCAACATGTGCTATTCGCGACTGGCTGATTTAGAACGGCATAAACTAAGACATATCGACGAGAAACCTTATAAATGTGATATATGCAACGCGAAGTTCACACAAACgaccattttgaaaaaacacaAGAAAATACATTCGATTGTCGGTTGTTTCCAGTGCGATATTTGCGAgaggaaattttcgaaaataaatagCTTGAAAAAACATGTTAGATTACACACGGATGATAAAAGTTATCGGTGTGAAATTTGCAACAAGTGTTTCAGATGGGAATGCACATTAGTTAAACATAAAAAAGGACATTTGGATGCTGGCACGAAAAAgtataaatgtgacgtttgtgataAATGTTTTGCTTATAAAAGCAATcttgaaaaacataaaaatgtgaTACATGCTGAGGAAATTTATTATGAAGAAGTAGATTTTAATTTAGAGTAA
Protein Sequence: METIVSDFDFTKLCRLCLIEDATLIDLFDFSSEMGCQIVDVLLKCAPVNVTRDDQLPKFICQECNTELEKINQFQIKIVESEKTLLQCLKLRINNFDQVPENFDFVDICTDIKSEEKELKNNFWEMDLPLDVNITNEDFTSKMTSENNTDTKPYLQNDNSSEINTKIKIEGMHQCTACEKKFETKKRLQNHKCSENMDKNSKSLSPLPVYSCTECKKQFKRETQLLAHKCKVNEKQETDDVNHNLQCSDCEKHFKRKSLLQTHKCKRRLYCKFCNKNFSMLCNFERHMRRHTGEKPYLCEVCSKSFADLGYFKHHLKTHIDDKPLECNVCKKRFKFVKNLNIHKRVHSGARPYRCDVCNKTFRQTHHLKRHKRLHTGERPYVCNICDKSFIQSVILTQHKRTHTGEKPFQCEICDMRFSQSNSYKIHKQLHADENSHKCEICNMCYSRLADLERHKLRHIDEKPYKCDICNAKFTQTTILKKHKKIHSIVGCFQCDICERKFSKINSLKKHVRLHTDDKSYRCEICNKCFRWECTLVKHKKGHLDAGTKKYKCDVCDKCFAYKSNLEKHKNVIHAEEIYYEEVDFNLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01530753;
90% Identity: -
80% Identity: -