Vnig001495.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000002.1:19564230-19566245[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00026 0.0071 17.3 1.7 1 23 34 56 34 56 0.98 2 12 3.8e-06 0.00011 23.0 1.1 1 23 62 84 62 84 0.99 3 12 6.8e-06 0.00019 22.3 0.5 1 23 242 264 242 264 0.97 4 12 2.7 74 4.6 0.0 2 21 273 292 272 293 0.93 5 12 0.0017 0.047 14.7 1.4 1 20 367 386 367 389 0.92 6 12 0.049 1.4 10.1 0.1 1 23 394 417 394 417 0.93 7 12 1.4e-05 0.00038 21.3 0.4 1 23 423 445 423 445 0.98 8 12 0.00055 0.015 16.3 0.8 1 23 453 475 453 475 0.98 9 12 0.00085 0.023 15.7 0.3 3 23 483 503 481 503 0.97 10 12 0.0012 0.033 15.2 0.1 1 23 509 532 509 532 0.94 11 12 0.00016 0.0044 17.9 0.2 1 23 544 566 544 566 0.97 12 12 0.00022 0.0061 17.5 0.3 1 23 648 670 648 670 0.98
Sequence Information
- Coding Sequence
- atGGCTGCGGAAGCATTACGCCAACTCGGAGGAATGTTTGGGAACAGTGAAAAACAGGAGAATCGAAATAATAATACGCAAATAATTGTAGAAGAAGAATATTCTTGCTCAACGTGTAGCGCCATGTTCAGAAAGAAGACAGACTTACAGAATCATTTAAACAGCCATCAGACGCAGCGGCCCTATCGTTGTCAGACTTGTAATGCTAGTTTCCAACGACCTTCTAGTTTAACAAATCACatgaaaatacataattatcAACCGGGGAGGGCGCTTGTAGCCGccgcaaataaatttttaaataatcaaatacCTGATTTTCCCGCGTCGATAAATTCGCAGCAGtggcaaccaaatcaaaaattAGATTCGAACGTCAGCGATCAGAGCTTATTCAATTCGACAGAACCGATTACGAGctggaattttgatttttccgGAAGCGATGATATTTCACAATCGGAAAACTTACCTATAACTCAGGAAATTACGGCCAGTTCGACGTTTCAGGAAGAAACTGATTTTGATTGTTATAATCCAAATGTAGACTCTCAAGTGATTATGAGTAGtcaaaataatcaatttaattaCCAAACTGCCGTTAAGGTTGAGGAATTGCCGTTTATCGGAGATTTGAAAAGCAATCCAACAATTGTCGAGTCGTTTGCCGCAACAAATCTACAAGAAATACAGACAAGCGTTTGTATAGATGAAAAAAGAACATACATATGCACAAAATGCGGAAAGGGTTTTTCTCGCGCTAAAGCACTCGCAAACCATCAAAATTTCCATAACGAAATATACAACAATCAGCTGGAATGTCAGAACTGTGACGACGTATTTATCGATATTGAATCTGTGACCGCGCATAAACGGGTGTGTGTTGGCAAAGTGAACGATGATAACATAACCTCACAAAATATACAAGCGCCACATACGCAGAGACTGCCATCTTTACTGAACAGCCATGTAAAATCCATAACAGATCCAGATTTCACTTTAAATTTGGAACAGAGCAGTAATACGAGTACAACTCAGGTCGATAAACCACAGACGGCTGCGAATCAAAATGCTAAGCCTTCGGCGAAGGTCGGCAAACACGCATGCATGGAATGCGGGAAGAGATTCGCCACTAAACAAAAGATGTTTCGACATATGTGGATCCATCGTAAGAAAACGTTTACGTGCGAAATTTGCGCGATGACTTTTACGTTGCAGCAAGAACTCGACGAGCATCGTTTGGCGCAACATCCCGGAGATACACCGTATGTTTGTCAGGAATGTGGGAAGTGTTTTGCGAGTCGCCAAGGTTTATGGGAACACGGCAGGGTGCATGGAAGTGGAACGGCTGGATTGTTTCGTTGCAAAGTTTGCGAGAAAAATTTTGCCAGCCGGCAGGGATATTTGATTCATACCAGAGTTCATACGGGGGAGAGACCGTACGGCTGTCGATATTGCTGGAAGGCTTTCCGAGATGGCGGAACGTTACGCAAGCACGAGAGAATACATACGGGCGAGCGACCTCACGCTTGCCCTCTGTGTCCTCGTGCCTTCAATCAAAAAGTAGTTCTGCGCGAACACGTTAGATGGGTTCATGCAGCGAACACTCGTCTTAACGATATCGATATGTATCCGTGTTCGGTGTGCGGGCAAACTGTTAGCGACAGGGAAGAACTCTGCGCTCACATAGTAAAGCACAGTGATCAAATAGCAGCTATAGCGAAAGAGAACGCTTCGAAACAAGGTAATGCCCTGGCGACGACGGTCGAAAACGATGTACAGTTACCAAAAGTGACAGGtattaagaaacaaaagaaGAAATCTAAAGTAAATTTGGTCGTTAGCGTTATGAAGAACAATATTAAAGAAACCGCTGTGCAGTTTATACAGTCGACGAATATTGAACAAATGAATGACACGGGTGATTTTGTCAGTGAAGAATTCACCTGTGATATGTGCGAAAATATATTCACATCACGTGACGATTTATTGACGCATGTGCGTATTCATATTTGA
- Protein Sequence
- MAAEALRQLGGMFGNSEKQENRNNNTQIIVEEEYSCSTCSAMFRKKTDLQNHLNSHQTQRPYRCQTCNASFQRPSSLTNHMKIHNYQPGRALVAAANKFLNNQIPDFPASINSQQWQPNQKLDSNVSDQSLFNSTEPITSWNFDFSGSDDISQSENLPITQEITASSTFQEETDFDCYNPNVDSQVIMSSQNNQFNYQTAVKVEELPFIGDLKSNPTIVESFAATNLQEIQTSVCIDEKRTYICTKCGKGFSRAKALANHQNFHNEIYNNQLECQNCDDVFIDIESVTAHKRVCVGKVNDDNITSQNIQAPHTQRLPSLLNSHVKSITDPDFTLNLEQSSNTSTTQVDKPQTAANQNAKPSAKVGKHACMECGKRFATKQKMFRHMWIHRKKTFTCEICAMTFTLQQELDEHRLAQHPGDTPYVCQECGKCFASRQGLWEHGRVHGSGTAGLFRCKVCEKNFASRQGYLIHTRVHTGERPYGCRYCWKAFRDGGTLRKHERIHTGERPHACPLCPRAFNQKVVLREHVRWVHAANTRLNDIDMYPCSVCGQTVSDREELCAHIVKHSDQIAAIAKENASKQGNALATTVENDVQLPKVTGIKKQKKKSKVNLVVSVMKNNIKETAVQFIQSTNIEQMNDTGDFVSEEFTCDMCENIFTSRDDLLTHVRIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -