Vnig018227.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000077.1:330964-332637[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.016 0.43 11.7 0.7 1 23 199 221 199 221 0.95 2 13 0.28 7.7 7.7 3.1 1 23 227 249 227 249 0.95 3 13 1.2e-05 0.00032 21.5 2.2 1 23 253 275 253 275 0.98 4 13 0.56 15 6.8 11.4 1 23 281 303 281 303 0.95 5 13 7e-06 0.00019 22.2 4.3 1 23 309 331 309 331 0.97 6 13 2.3e-05 0.00063 20.6 2.5 1 23 337 359 337 359 0.96 7 13 0.001 0.028 15.4 7.7 1 21 365 385 365 386 0.94 8 13 8.5e-07 2.3e-05 25.1 1.8 1 23 393 415 393 415 0.97 9 13 0.00064 0.018 16.1 5.3 1 23 421 443 421 443 0.96 10 13 0.00071 0.019 15.9 5.3 1 23 449 471 449 471 0.97 11 13 9.9e-06 0.00027 21.8 3.3 1 23 477 499 477 499 0.98 12 13 1.4e-06 3.9e-05 24.4 2.0 1 23 505 527 505 527 0.97 13 13 6.6e-05 0.0018 19.2 2.0 1 21 533 553 533 554 0.94
Sequence Information
- Coding Sequence
- atggAGGAAAAGAGTGTACCTGATAGTGAAACAAATTTGTTAGAGATATATGATAGCCAGGCAGgtaaattagaattaaaaacattacttgaattaaatattaaaaaagaaccGACTGAGGGACGTCCAACAATTCAAACAAATGAAAAGCAATATATCGAATTCAGTACTGTTTTTTCTACTAATAACCACAATGAAAATAACAGAACAGATAAATCAACAGATGGGTCgcaattcataattaaaaaagagcCTGTAGAAGATATTTTAACAATTCAACCGAGCGTTAATGGAGACAGAGCTTTGTTTAGCATAGAGAATAGTTGGGAAAACGCTGATTTACCGCTCCAGTTTTGTGAGTGCAATATTAAAGAAGAAGCGTTGGAAGTTATTCCAGTAATTCAAACAAACGCGAATCTAGACACCGAATTTATCGGCAATACAACTGTAAAGTTAGAACCAATTGACGTAGGCGAGAGTTGGGaggatttttcttttatgaacgCAGATCCATTAATTACTGATTGTAAACGTAAAATCATTCCGAAAGTTCaatcgaaaaaaaagaaaagacaaTGCCGTAGTCGTAAAAAACATCAATGCaacatttgttataaatattttgccGAATTAAGAGATTTGGAAATACACAAAGGAGTTCACGATGGCAAAGCGCCTTATCAGTGTAACGCGTGTCAAAAATGCTTTAAGGCCGACGTAACTGTAAAAAGACATGCAAAATTTCATGCCAGAATGTATAGCtgtgacgtttgcaataagTGTTTCTCGCAAGCAAGCGGCTTGAAAATGCACAGCCGACTTCATACTGGCGAACGGCCATATTGCTGTGACTTTTGCAGCAAGTGTTTCTACAAAATGAGTCACTTAAAATCACATAGGTTTTTACATACcggcgagaaaccatatcaatgcaACCTTTGCGACAAAACGTTTAGCGACTCTTCGTATTTTCGAAGGCACAAACAGTTTCATACAGGCGAGAGACCGCACATatgtgacgtttgcaataagACGTTCACTCAAACGAGTAGTCTGAATATTCACAAACGACTCCACACCGGTGAACGGCCATATCGATGTGAAGTTTgcaataagtgtttttataaatctaGTCATCTAAAGAATCATAAGTGCATAAATGGTAGTGGACAAGGACATGAATGTGATATTTGCAATAAGGCTTTTAGCGACGCGTCCTATCTTAAGAGGCACAAACGGTTACACACAGGTGAGAAACCACATCATTGTGACGTTTGCACTAAGAGTTTCACACAAGCGAACAGTTTAAAAATGCATAAACGACTACATACTGGCGAACGACCGTTTCAATGCGACATTTGcagtaaatgtttttataagaTGAGCCACTTAAAAACACATGGGTTAATACATACACGTGATAAGCCGCATCAGTGTAACATATGTAATAAGTCTTTTAGTGACGGttactattttcaaaaacatataaaaattcaCACTGGGGAAATATCACATACGTGCGATGTTTGTGGCAAAAGTTTTACCCAGCTTAGTAGTTTGAATATTCATAAAAGATTGCATACCGGTgaaaaaccgtatcagtgtgacgtttgtaacagACGTTTTTTTCAGCCAAGCAATTTAAACAACCATAAATGTATACCGAAGAGCTAA
- Protein Sequence
- MEEKSVPDSETNLLEIYDSQAGKLELKTLLELNIKKEPTEGRPTIQTNEKQYIEFSTVFSTNNHNENNRTDKSTDGSQFIIKKEPVEDILTIQPSVNGDRALFSIENSWENADLPLQFCECNIKEEALEVIPVIQTNANLDTEFIGNTTVKLEPIDVGESWEDFSFMNADPLITDCKRKIIPKVQSKKKKRQCRSRKKHQCNICYKYFAELRDLEIHKGVHDGKAPYQCNACQKCFKADVTVKRHAKFHARMYSCDVCNKCFSQASGLKMHSRLHTGERPYCCDFCSKCFYKMSHLKSHRFLHTGEKPYQCNLCDKTFSDSSYFRRHKQFHTGERPHICDVCNKTFTQTSSLNIHKRLHTGERPYRCEVCNKCFYKSSHLKNHKCINGSGQGHECDICNKAFSDASYLKRHKRLHTGEKPHHCDVCTKSFTQANSLKMHKRLHTGERPFQCDICSKCFYKMSHLKTHGLIHTRDKPHQCNICNKSFSDGYYFQKHIKIHTGEISHTCDVCGKSFTQLSSLNIHKRLHTGEKPYQCDVCNRRFFQPSNLNNHKCIPKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01530702;
- 90% Identity
- -
- 80% Identity
- -