Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000034.1:2577805-2579699[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 9.2e-06 0.00025 21.9 4.7 1 23 231 253 231 253 0.99

2 12 0.00035 0.0096 16.9 2.1 1 23 259 281 259 281 0.97

3 12 1.7e-05 0.00047 21.0 3.4 1 23 287 309 287 309 0.99

4 12 3.7e-05 0.001 20.0 4.4 1 23 315 337 315 337 0.97

5 12 0.0039 0.11 13.6 2.5 2 23 344 365 343 365 0.98

6 12 0.00014 0.0038 18.1 2.0 1 23 371 393 371 393 0.99

7 12 9.8e-05 0.0027 18.6 2.0 1 23 399 421 399 421 0.95

8 12 5.3e-07 1.5e-05 25.8 2.1 1 23 427 449 427 449 0.99

9 12 0.00099 0.027 15.5 4.5 1 23 455 477 455 477 0.98

10 12 3.8e-05 0.001 19.9 0.6 3 23 485 505 483 505 0.98

11 12 0.00018 0.005 17.8 1.1 1 23 511 534 511 534 0.96

12 12 6.7e-05 0.0018 19.1 0.6 1 23 540 563 540 563 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	9.2e-06	0.00025	21.9	4.7	1	23	231	253	231	253	0.99
2	12	0.00035	0.0096	16.9	2.1	1	23	259	281	259	281	0.97
3	12	1.7e-05	0.00047	21.0	3.4	1	23	287	309	287	309	0.99
4	12	3.7e-05	0.001	20.0	4.4	1	23	315	337	315	337	0.97
5	12	0.0039	0.11	13.6	2.5	2	23	344	365	343	365	0.98
6	12	0.00014	0.0038	18.1	2.0	1	23	371	393	371	393	0.99
7	12	9.8e-05	0.0027	18.6	2.0	1	23	399	421	399	421	0.95
8	12	5.3e-07	1.5e-05	25.8	2.1	1	23	427	449	427	449	0.99
9	12	0.00099	0.027	15.5	4.5	1	23	455	477	455	477	0.98
10	12	3.8e-05	0.001	19.9	0.6	3	23	485	505	483	505	0.98
11	12	0.00018	0.005	17.8	1.1	1	23	511	534	511	534	0.96
12	12	6.7e-05	0.0018	19.1	0.6	1	23	540	563	540	563	0.95

Sequence Information

Coding Sequence: ATGGAAAAACTATCTGCAAATCTCTTCGGATTAAGTAGAATGTGTCGATTGTGCTTATCGAGAGGCGTTTCaacgataaatatttttgcCGTGTCAAGCGAATTAATGGGCCTAGTAGCTGATGTCATTATGAAGTGTGCTCCAGTTCAGATAACGAGATGTGATGAAATGCCGAATAACATCTGCCAATCATGTTACactcaactgaaaaaaaatcaccaGTTCCAGATGCAAATCGTACATTCTGACAAAATACTGCGACATTATCTACAACAACTACGACCTTCTAACAAACAAATCAAGACTGAATGGTCCCTTCTGGAGCCCGCTAAGAATCCTTCAATCCAGAACACGATGAAATGCGAATCTTTAGATGCCcaaaacgtgtttgatatggaCGTCGACTTGAAAGAGGAAGTGCCGACAAATTATACTTCGCCATACAAAAATAGcgaagaaatgtttttaaaatgtgaaattaaAGAAGCATTTATAGATGATTCGTCAATTCCAACCGAATGTACTGACAACATAATTGACACTTTATCTGGGGGTGACGACGGTATTGAAATTAGTTGTGAAAATTCAGAGATCGGAAAACAATCGGAAAAACATATTGCTAAACACGAAgttggaaacaaaaaaattacggcATCACTTAAGAAGCACGAAAAATCAAATGGAATGAAGTATacatgtgacgtttgtaataaatgtttcagtAGTTCACGGTATTTTAGGATTCATCAGCGCATACATAATGGAGAGAAACCATATGAATGTAACATCTGTCAAGAAAGCTTCCACACTCTTAGCACTTTGAAGATTCACAAGTATATACATattggtgagaaaccatatcggtGTGAAGCATGTGATAAATGTTTCAAAAGCTCATATGCGTTTAAAATACACCAGCGCATACATACTGGTGATAAACCACATGAATGtcacatttgtaaaaaaagatttatCAATGTAAGCCATTTGCAGGCTCATGTGCGTggacatactggtgaaaaaccaaataaatgtgacgtttgtaataaacgtTTCGGCAGTTCAGTTGAATTAAAATGTCACCAGCGCATACATACTGACGAGAAACCATATGAAtgcaatttttgtaataagagATTCAGCTTATTactatatttacaaaatcatcAGCGTATACATTCAGGTGAGAAATCATATCTGTGCGACGTTTGTGGTAAGTGTTTTGGCAATTCGAATTCTATGAAACGGCATCGGCtcatacatactggtgagaaaatGTATCAATGTGACGCCTGTGATAGGAGTTTCAGGGATTCGGCCCATTTAAAGAAACATCAGcgtgtacatactggtgagaggCCATATCATTGTGACGTATGTATAAAGAGTTTTAAACAATTAGCACATTTGAGAACACATCAGCGCttgcatactggtgagaagccttATTGGtgcgacgtttgtaataagagattCAGACAATTAGATACCTTGAGAGGACATCAGCGTGTGCATACAGGCGATAAACCGTACCAATGTGGCGAATGTGATCAGCGATTCGCTCTAAATCAACACCTCAAAACGCATTTAAAGGGAGTTCATAACAAATCTATGATTTATAAATGCACAAATTGCGAAGAGACATTTAAAATGAAACGTGATTTAAACTGGCATATACAAGACGTTCATAATGTTCCCAAGTGA
Protein Sequence: MEKLSANLFGLSRMCRLCLSRGVSTINIFAVSSELMGLVADVIMKCAPVQITRCDEMPNNICQSCYTQLKKNHQFQMQIVHSDKILRHYLQQLRPSNKQIKTEWSLLEPAKNPSIQNTMKCESLDAQNVFDMDVDLKEEVPTNYTSPYKNSEEMFLKCEIKEAFIDDSSIPTECTDNIIDTLSGGDDGIEISCENSEIGKQSEKHIAKHEVGNKKITASLKKHEKSNGMKYTCDVCNKCFSSSRYFRIHQRIHNGEKPYECNICQESFHTLSTLKIHKYIHIGEKPYRCEACDKCFKSSYAFKIHQRIHTGDKPHECHICKKRFINVSHLQAHVRGHTGEKPNKCDVCNKRFGSSVELKCHQRIHTDEKPYECNFCNKRFSLLLYLQNHQRIHSGEKSYLCDVCGKCFGNSNSMKRHRLIHTGEKMYQCDACDRSFRDSAHLKKHQRVHTGERPYHCDVCIKSFKQLAHLRTHQRLHTGEKPYWCDVCNKRFRQLDTLRGHQRVHTGDKPYQCGECDQRFALNQHLKTHLKGVHNKSMIYKCTNCEETFKMKRDLNWHIQDVHNVPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01511135;
90% Identity: iTF_01511135;
80% Identity: -