Vnig006056.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
-
Assembly
GCA_034508555.1
Location
JAVRKA010000012.1:1686980-1688734[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 7.9e-06 0.00022 22.1 0.7 1 23 249 271 249 271 0.98
2 12 0.00093 0.026 15.5 2.0 1 23 277 299 277 299 0.97
3 12 1.5e-06 4.1e-05 24.4 7.5 1 23 305 327 305 327 0.98
4 12 0.00025 0.007 17.3 5.5 1 23 333 355 333 355 0.98
5 12 0.00094 0.026 15.5 4.5 1 23 361 383 361 383 0.99
6 12 0.00034 0.0095 16.9 3.1 1 23 389 411 389 411 0.98
7 12 8.7e-05 0.0024 18.8 0.9 2 23 418 439 417 439 0.97
8 12 0.0002 0.0054 17.7 3.2 1 23 445 468 445 468 0.96
9 12 8.3e-05 0.0023 18.8 3.2 1 23 474 496 474 496 0.99
10 12 5.6e-05 0.0016 19.4 3.2 1 23 502 524 502 524 0.94
11 12 2.1e-05 0.00058 20.7 2.9 1 23 530 552 530 552 0.99
12 12 3.2e-05 0.00089 20.1 3.8 1 23 558 580 558 580 0.98

Sequence Information

Coding Sequence
ATGACTGaggaaatatatttcaaaactgAGGATCTATGTGATTTCCAAATAAAAGAAGAAACGGATAATAATCCATTGATTCCAATCGAATGCACAGATTATATTTACAAGAGGCAGGACAATGATATCGATTCTAAAGACATTAAGGCTAATATTAGTGGCATCAAAGAGCCAGTTGACCCATTGGGAAAAATGGAAAGCATTCTTTCTACGGAAATGATTAACCTATCCCACAAAGATAATCAAGAATTGAATAAAGGTGCATATGTAAAACCGGAAGATGCGTATactgttaaaataaagttagaaCCGGTGGACGAAAGCACATTAAATCCCACTGAATATGTAATTTATGACACTACTTTATCTAATAAGGATGACGGCGGTGAAAAAACAAAGACTAAGGTTGATagcataaaaatgataaatacaCCAAGAAACTGCGAGCGTCATCTTTCTTCAAAAAGTAGTGATCATTCCTGcaaatgcaaaaataatatgaaagagaaaatatttattagatgCGAAGAATTATGtagtgttcaaataaaaacagagCCCTTGGATGAGATATCAACTCCAATAGCAAATACTAATGAAACAGGGGATAGTTTATCCCAAAGCTGTGGTAATAACAGCGAATATGAAAATTCAGTCAAATATTCTCGACCTAGTAAAATCGCGGAATATTTTAATAGATCTGAAGATGCCAACAAACCGAGTCCAGTAAATCAAGataaaccataccagtgtggtGTTTGTAAACGAGGCTTTAATAGACGAGCTGATTTGAAAAGACACCAATTATTACATACAAATGAGCGACCGCATAGATGTAACGTTTGTAAACGAGGCTTTAAAAGACGAGCTGATATAAAAATTCACCAGTTATTACATACTGACGAACGACCACATAAATgcaatgtttgtaataaatgtttcagaaATTCTAACAATCTGAAAGTCCACCAgcgtacacatactggtgagaaaccatatcggtGTGATGTTTGCAAAAAGTACTTTGCTCACTCTAATTCTTTGAAAAAACACAAAAGACAACACTGTGACAAAAAAtcttatcagtgtgacgtttgtaacaattgtttcaaaaattctaaCCGTTTAAATACTCATAGACTTACACATACTAGCGAGAAGTCGTATCAAtgtgaaatttgttttaaatgtttcaatCAGTTGGACCGTTTACAAGTTCACAAACTTAtgcataccggtgagaaaccgcttcagtgtgatatttgtaaagAAGAGTTCGCACATTTGAGCAGTTTAAAAGCTCATAAACTAACTCACAGTGAGAAAAAACCATATCATTGTGAAATTTGCAATAAGTATTATACCCGACTGTTTGATTTAAAGAGACATTTGAAATTAATACACAccggagagaaaccataccaatGTGATGTCTGTAATGAGTGTTTTAGACTCTCGAGTACACTAAATACGCACAAGTTAACACATACTAGAGAGAAGCTGTATCAGTGTGACGTCTGTAATAAGTGTTTTACGCGATTAGACAATATAAAAAGACACAAAGTTttgcatactggtgaaaaacggtatcaatgtgacgtttgtagtaTGTGTTTTACCCAATCGCAATCCTTAAAAGCACATAAAAGGATACATtctggtgagaagccgtatcagtgcGATGTTTGTGGTCAGTGTTTTTCCCAAACATATTCTTTGAAAGTACACAAGAAACAACATAATAGTGCAGGTTAA
Protein Sequence
MTEEIYFKTEDLCDFQIKEETDNNPLIPIECTDYIYKRQDNDIDSKDIKANISGIKEPVDPLGKMESILSTEMINLSHKDNQELNKGAYVKPEDAYTVKIKLEPVDESTLNPTEYVIYDTTLSNKDDGGEKTKTKVDSIKMINTPRNCERHLSSKSSDHSCKCKNNMKEKIFIRCEELCSVQIKTEPLDEISTPIANTNETGDSLSQSCGNNSEYENSVKYSRPSKIAEYFNRSEDANKPSPVNQDKPYQCGVCKRGFNRRADLKRHQLLHTNERPHRCNVCKRGFKRRADIKIHQLLHTDERPHKCNVCNKCFRNSNNLKVHQRTHTGEKPYRCDVCKKYFAHSNSLKKHKRQHCDKKSYQCDVCNNCFKNSNRLNTHRLTHTSEKSYQCEICFKCFNQLDRLQVHKLMHTGEKPLQCDICKEEFAHLSSLKAHKLTHSEKKPYHCEICNKYYTRLFDLKRHLKLIHTGEKPYQCDVCNECFRLSSTLNTHKLTHTREKLYQCDVCNKCFTRLDNIKRHKVLHTGEKRYQCDVCSMCFTQSQSLKAHKRIHSGEKPYQCDVCGQCFSQTYSLKVHKKQHNSAG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-