Vnig012430.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
-
Assembly
GCA_034508555.1
Location
JAVRKA010000034.1:2525665-2532107[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.053 1.5 10.0 6.1 1 23 324 346 324 346 0.99
2 12 1.7e-06 4.8e-05 24.1 4.7 1 23 352 374 352 374 0.99
3 12 9.3e-07 2.6e-05 25.0 4.4 1 23 380 402 380 402 0.99
4 12 0.0013 0.035 15.1 4.4 1 23 641 663 641 663 0.96
5 12 0.00049 0.013 16.4 1.0 1 23 669 691 669 691 0.97
6 12 2e-05 0.00054 20.8 1.7 1 23 697 719 697 719 0.97
7 12 1.5e-05 0.00041 21.2 3.2 1 23 725 747 725 747 0.98
8 12 4e-06 0.00011 23.0 1.6 1 23 753 775 753 775 0.97
9 12 1.8e-05 0.00049 21.0 4.4 1 23 781 803 781 803 0.98
10 12 0.00031 0.0086 17.0 0.8 2 23 809 830 808 830 0.97
11 12 2.4e-06 6.6e-05 23.7 3.3 1 23 836 858 836 858 0.99
12 12 0.016 0.44 11.6 2.5 1 23 864 886 864 886 0.97

Sequence Information

Coding Sequence
ATGAAAGAAATATCAATAACTGGATCGGGCTTAAGGACAATATGTCGGTTGTGTTTATCGAGTGGCGTTATACTGTTAGACATATTTAAGTTTTCATCTAAAATGAGGAATAGCGTGGCTAGTGTAATCATGAAATATGCTGCTGTTCAGATAACTAAAGGCGATGgaatgccaaatttcatctgCCAATCATGTTACACTCAAGTGGAGAAAATTCACCATTTCCTGATGCAAATAGAACAGTCTGACAGAACACTGCGACGTAATATTCAGCATTACGTTTCTAATAAACCAATCAAAGTTGAATGTTTCGTTCAACCATTTGAGGAACCTTCGATCCATTACACTAATAAAGATATACCTGTCAAATATGAATCTTTAGAACTCAATACTGCGTTTAACATAGATCTTAATTGGAAAAGGACCGATCGTGAAAAATTCAATCAAGAAAATAAACATGAAGAAGTGTGTATTAAATCTGAAAGCAATGTCGAACTAATggatgttaatttatttttaacaacaaaatgtGAAGGTGTCCCAGAAGACATTTCGTCTAATATAGATAGCAAAGAATTTAGCTGTAAAGAGTCAAACTTTGACATAAATGATACTAAAGTGAGAGAAGACATGACCGTAAATTTGAAAGAGACAAAACaagaaaatgatattttaacgaGCAAATTTATTGAAAGAACGTCTCTAAAATCCGAAATCAAATTCGAACCGACAGATGATAATTTAATAACTCTAACAGAATCAGTCTATAACACAGTAAGCGCTTCATCAAACGACGAGGAAAATGAAATTAGCTACGAAGAcccgaaaattaattttgaccaCGAATCGGAGAAATCGTGTTTACGTTTTGCAAATGTAACAGAAATTTTCAGTAAATGTGATGAAGCATATTATAAACATATTTCGGTCTATCGTCagaaacacaaaaaaacaaataaattgaaagGGTATCAATGTGACTTTTGCTGTAAATATTTCACCGATCGTTCTGGTTTGTATACTCATAAACGAACGCATACGGGTGATAAACCATACAAATGCAACGTTTGTAAGAAGTGTTTCTCTCAGTCACCCAATTTAAATCGTCACAAGCGTATACATACCGGCGAGAAACCTTATCAATGTGACTTTTGTGATAAGTGTTTCTCCGACTCATCCACTTTAAATAAACATACacgtatacatactggtgagaaaccttatcagtgtgatatttgtaataGGAACTCTTTGGAATCTGCTGATGACAAAACAAGCGATCAGATGACTGTAAAGAAAGATAACAAAATAGGTGACCATGAATGCAGCTTTCATTTCGAAAATTCAAATGTGAACAGCAGCGAAAAACTCATAGAAAATGAGAATGCAAGAAATAATGACACAAACGGTAGACATGTTGAATCAAATGATGTCAAAGTTAATCTAGAAATGTTTCAATGTGACCTTCTAGAATGCATTATTGGTTCAACTAAAGGTAAAACAACAGTCGATGGAATAAAAAAAGATGGCGGTTTTAATGTTGATCCTGCAGACGTCAACAGtgataaatttattgaaaatatggaGGTACAAAATGAAGACAGTGCAGTTATTgaatccaaaaatgtaatttttataaagcaAGAATATAGCGACCCTAATTTTAATAGTGATGATGAGGATAAGATGGACAAAGCAATTGGCAGTCGTGctgaagaaaatattaatacCACTTTAATAAAACAGGAAGAATTTGAAGACGACAATATAGATGCCGACAGTGTCGATAGAGTCTATGAATTCATGAAGATAGAAATTGGAGAAGATAAAATTCTTAACCGTGAAAGTTCTGTAAAAGCAGCTACTCCGAATTCACAGATGAGCCTAAGAGATTTATTATTGCGTAATGACAATAAATCATATAAGTGCAACGTTTGTTATAGGTCTTTTAATCAGTTGCATTCATTGACTAAACATAAAGACTTACATAATTGTGAGAAACGAtatcaatgtgatgtttgtaaatTAAGTTTCAACGAGctaggcaatttaaaaaagcATAAGTTTGTGCACGCAGACGAAAAACCATACCGTTGCGAAATTTGCAGTAGATCGTTTAGTCAGTTGTATTCTTTGAATAGACATAAACTGCTACACAccggtgaaaaaccatatcagtgcgACGTTTGTAACAAATGCTTTAACGAATtgagcaatttaaaaaaacataaattagtaCATACTGatgagaagccgtatcagtgcAACGTTTGCAGCAAGTCGTTTAGTCAGTCATATGCATTGAATAGACATAAACTACTACATACGAGTGAGAGACCGTATCAGTGTGAAATTTGTAACAAGTGCTTTGATCAGTTAGATCACTTAAAAAGTCACCAGTTACTGCACGCAGATAAGAGAAATCAATGTGATATTTGCAAAAGAAGTTTCGGTCAGTCTAGCCAACTATATTCTCATAAACTCATCCATAGTGATAAAAAACCTTAtcggtgtgacatttgtaaGAAGTGTTTTAAACAACCAGGTGCGCTGAAAAGACATAAATTGACGCATACAAATGAGAAGCCATACccgtgtgacgtttgtaataaaggATTTAAAGACTTAACAACATGTAAACGTCATAAAATGGTGCACACACGAGAGTCTAATACTGACCGAGAAGATGTAGAAGTCAAAGAGGCCGAAGAATTTGTAGGACAAGAagatcaaaaaaacaaaataatagataACAGTGAAATAGTGTCAGAAGTGGTAGAACCCAAAGAAGCAAATTGCAAAATCGTCTCTCCTTCGAATATTGCGGTCAGTCAGGCTTTCAAAACAGGTATATTATGGGCAGAACGGCAGCCTAATATTGAACAAAGTGATTTAGAAGTTCTTAGAAGGATTTACAATGTGGTTGCATGTATGGCGGAACGGGAAAAATTCGAACTATAA
Protein Sequence
MKEISITGSGLRTICRLCLSSGVILLDIFKFSSKMRNSVASVIMKYAAVQITKGDGMPNFICQSCYTQVEKIHHFLMQIEQSDRTLRRNIQHYVSNKPIKVECFVQPFEEPSIHYTNKDIPVKYESLELNTAFNIDLNWKRTDREKFNQENKHEEVCIKSESNVELMDVNLFLTTKCEGVPEDISSNIDSKEFSCKESNFDINDTKVREDMTVNLKETKQENDILTSKFIERTSLKSEIKFEPTDDNLITLTESVYNTVSASSNDEENEISYEDPKINFDHESEKSCLRFANVTEIFSKCDEAYYKHISVYRQKHKKTNKLKGYQCDFCCKYFTDRSGLYTHKRTHTGDKPYKCNVCKKCFSQSPNLNRHKRIHTGEKPYQCDFCDKCFSDSSTLNKHTRIHTGEKPYQCDICNRNSLESADDKTSDQMTVKKDNKIGDHECSFHFENSNVNSSEKLIENENARNNDTNGRHVESNDVKVNLEMFQCDLLECIIGSTKGKTTVDGIKKDGGFNVDPADVNSDKFIENMEVQNEDSAVIESKNVIFIKQEYSDPNFNSDDEDKMDKAIGSRAEENINTTLIKQEEFEDDNIDADSVDRVYEFMKIEIGEDKILNRESSVKAATPNSQMSLRDLLLRNDNKSYKCNVCYRSFNQLHSLTKHKDLHNCEKRYQCDVCKLSFNELGNLKKHKFVHADEKPYRCEICSRSFSQLYSLNRHKLLHTGEKPYQCDVCNKCFNELSNLKKHKLVHTDEKPYQCNVCSKSFSQSYALNRHKLLHTSERPYQCEICNKCFDQLDHLKSHQLLHADKRNQCDICKRSFGQSSQLYSHKLIHSDKKPYRCDICKKCFKQPGALKRHKLTHTNEKPYPCDVCNKGFKDLTTCKRHKMVHTRESNTDREDVEVKEAEEFVGQEDQKNKIIDNSEIVSEVVEPKEANCKIVSPSNIAVSQAFKTGILWAERQPNIEQSDLEVLRRIYNVVACMAEREKFEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-