Vnig001409.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000002.1:17271905-17277180[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.095 2.6 9.2 6.3 1 23 170 193 170 193 0.97 2 14 0.0013 0.035 15.1 0.5 1 23 224 247 224 247 0.95 3 14 9.5e-05 0.0026 18.7 0.1 1 23 272 294 272 294 0.95 4 14 0.00082 0.023 15.7 0.4 1 23 300 322 300 322 0.97 5 14 0.00019 0.0053 17.7 0.4 1 23 328 351 328 351 0.96 6 14 4.8e-05 0.0013 19.6 1.8 2 23 358 379 357 379 0.96 7 14 9.1e-06 0.00025 21.9 3.0 1 23 385 407 385 407 0.98 8 14 0.00033 0.0091 17.0 0.1 1 20 413 432 413 433 0.96 9 14 0.00024 0.0067 17.4 0.1 1 23 437 459 437 459 0.95 10 14 0.00056 0.015 16.2 0.1 1 23 465 487 465 487 0.97 11 14 0.038 1.1 10.5 2.1 1 23 493 516 493 516 0.95 12 14 0.0047 0.13 13.3 3.2 1 23 522 544 522 544 0.95 13 14 1.9e-06 5.1e-05 24.0 2.6 1 23 550 572 550 572 0.98 14 14 0.054 1.5 10.0 3.0 1 22 578 599 578 602 0.89
Sequence Information
- Coding Sequence
- atgaagaatAAACCGAAAGAAAACTTGTGCCGTTCTTGCATGTGTGAAAATAAGGAAATGATATCGATATTTCAGTTCCACGAATCTTCGAAAAATGAATACAATCACGCTTACATGCTAATGGCATTCACTTCCGTACAGATATCCGCCGGGGATGGATTACCCGAGCTAATATGCTTAGAATGTGCAGATCAAATCAGTCAGTGTTATTTATTCAAACTAAAATGTGAGAATTCGGATGTACTTCTAAGAAAACAGGAAGCAGATTCGGAATTTTGCACGACGAATTACGACAATTTGATGATTAAAATTGAAGATAATCAAATCAAAGAGGAATatcaaaatgaattttacgacgatatcaattttaatgGTGATTCTAGTAGCGAACCAGAGGATGAGACTCCGAATAAAAGTTCTGATATattcacagttaaaaaaaagtttacgaAAAAATCTctagataaaaacgaaaatcgCACATCTAAAATTAAAGCAAAAGACAGATTTAAGTGCAAGACTTGCCGGAAATCGTTTCTTTACGAACGCTGTTTAATCAAACATATGAAAAACCAACACGATATAAGTCTCGAGAGCCATCGGTCCAAAACACCACGGTGTAAAGTGAAAGGTGATAAAGTGACTGAAGACAGAAAGGCAGAGAAAAAGTATTGCTGTGACAAATGCCCCATCAGTTATTCTGAAGAAGAGCTGCTCACAAAACACATTAACGAAAGACATTTTTGTgcaatttgtgtaaaaaaagttaaataccTTAATATTCACTTAAGAtcacataccggtgagaaagcATACCTTTGCGCGCTGTGTGGTAAAGGGTTCAGTCAGCAGGCTGGCTACAACGAACACATGCTACGTCACAGCGGTATCAGATCATTCACATGCGACACGTGCGAAATGAGTTTCATCACAAAAGGTGAACTCGTCTCTCATTCACTCAAACACTCTGAGAACAAACAATTCCAGTGCGACATCTGCAGCTCGACGTTTTCCAGATCGGACACTTTGTATGCGCATCGTGAGATCGTTCACTTTGGCAGGAAGAAGTGGGAGTGCGATATTTGTCGCAAGACGTTCACGCAATCGCATTCGCTCGTTAAACATAAACTGATACATTCGGGTGAAAAACCGCACAGTTGCAACTTTTGCGAGAAGAAGTTTACGCAGAAAGCGACATTGATTGCCCACCTCCGGACACATACTGGCGACAAACCCTACGTCTGCAGTACTTGCGGTCAAGTTTTTGGCCAACGATCGACGCTCAGAtcacataccggtgagaaagcGTATTTATGTGCGCTGTGCGGCAAGGGGTTCAGCCAACAGGCGGGATATAGTGAACACATGCTACGTCATAGTGGCATTAGATCATTCACATGCGATATCTGTGAAATGAGCTTCATCACCAAAGGAGCGCTCGTTTCACATTCTATTAAACATTCCGTCGAAAAAATTTACCAGTGCGATTCATGTGTTGCCGTATTCCACAGACCGAGGTCACTTAAACAACACAAAAAGTTTATTCACGGCACCAAAGACAAACACGAATGTGACATTTGCCATCAGACATTCGGTTATCTCCGATCGTTGCGTCGACATAAGGTTATCCATACGGGCGTCAAACCATACAGCTGTAATTTTTGCGAAAAGACGTTCACGCAAAAGACTACTCTGACATCGCATATTCGAGTTCATACTGGTGAACGACCTTATTTTTGTAAAGCTTGTGGACAATCGTTCGGGCAACGATGTTCATTGAGGTCACACAAAATCAAAGAAAATCACTAA
- Protein Sequence
- MKNKPKENLCRSCMCENKEMISIFQFHESSKNEYNHAYMLMAFTSVQISAGDGLPELICLECADQISQCYLFKLKCENSDVLLRKQEADSEFCTTNYDNLMIKIEDNQIKEEYQNEFYDDINFNGDSSSEPEDETPNKSSDIFTVKKKFTKKSLDKNENRTSKIKAKDRFKCKTCRKSFLYERCLIKHMKNQHDISLESHRSKTPRCKVKGDKVTEDRKAEKKYCCDKCPISYSEEELLTKHINERHFCAICVKKVKYLNIHLRSHTGEKAYLCALCGKGFSQQAGYNEHMLRHSGIRSFTCDTCEMSFITKGELVSHSLKHSENKQFQCDICSSTFSRSDTLYAHREIVHFGRKKWECDICRKTFTQSHSLVKHKLIHSGEKPHSCNFCEKKFTQKATLIAHLRTHTGDKPYVCSTCGQVFGQRSTLRSHTGEKAYLCALCGKGFSQQAGYSEHMLRHSGIRSFTCDICEMSFITKGALVSHSIKHSVEKIYQCDSCVAVFHRPRSLKQHKKFIHGTKDKHECDICHQTFGYLRSLRRHKVIHTGVKPYSCNFCEKTFTQKTTLTSHIRVHTGERPYFCKACGQSFGQRCSLRSHKIKENH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -