Vnig012427.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
-
Assembly
GCA_034508555.1
Location
JAVRKA010000034.1:2513885-2516939[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 8.3e-05 0.0023 18.8 2.4 1 23 268 290 268 290 0.99
2 14 8.3e-05 0.0023 18.9 1.3 1 23 296 318 296 318 0.98
3 14 0.34 9.2 7.5 5.8 1 19 324 342 324 345 0.88
4 14 1.2e-05 0.00032 21.5 3.2 1 23 381 403 381 403 0.99
5 14 0.00019 0.0051 17.7 4.6 1 23 409 431 409 431 0.97
6 14 0.0061 0.17 13.0 1.5 1 23 437 459 437 459 0.98
7 14 4.3e-05 0.0012 19.8 4.3 1 23 497 519 497 519 0.99
8 14 2.4e-05 0.00066 20.6 2.7 1 23 523 545 523 545 0.98
9 14 0.00047 0.013 16.5 3.0 1 23 551 573 551 573 0.98
10 14 8.4e-05 0.0023 18.8 1.6 1 23 579 601 579 601 0.99
11 14 8.3e-06 0.00023 22.0 4.0 1 23 607 629 607 629 0.99
12 14 4.4e-05 0.0012 19.7 2.3 1 23 635 657 635 657 0.99
13 14 6.2e-06 0.00017 22.4 3.0 1 23 663 685 663 685 0.98
14 14 0.00064 0.018 16.1 6.2 1 23 691 713 691 713 0.98

Sequence Information

Coding Sequence
ATGGTAGAAATAGCAGTAAATATGTCTCAGTTAGATAGAATGTGTCGATTGTGCTTATCGACTGGCGTTGCGTTGTTGAACATATTTCAGTCTCCGGCAAAAACGAAAAGCAGAGTTGCTGATTTAATTATGCAGTGCGCTCCCGTTAAGataaaaaaatgtgatgagATGCCGAATTTTATTTGCCGATTATGTTACACTAAACTGGAAAAAAATCACCAGTTCCAGACACAAATAGTACAGTCAGAAAAAACACTGCGACGCTACATACAGCAGCTTCACACTTCTGACGGACAAATCAAGACTGAGTGCTctgagcattttttaattcgtGATGTAAATGCATATAATGCCACTGTAAACTCACAAATTTCAACAGAATGTGCAGATAACACAGTAGAAAGGTTTTCAAGGAATGATAATTGCGAAATTAGCTGCGAAGacacaaaaaacgattttgacATAGATCTCAATTGGAAAGAGAAAGAGCATGCTAATTTTAATTCAGAAAATAAAGTTAAGGAAGAAACGACTTTCAATTTTGGAATCAAAGATGAATTGATAACAGATGACAATTCACTAAATACGTCAGAACGTGCTGATGACCTATTCGATAATTTTTCAAAGTGTTATGGCGGTGGAATCAGTTGCAAGGACCCAATAATCGATATGAACGGCACTTTGAGAAGTTTGGAGCGTACTTATTCTGCTGATACAATAGGAAATTTTGATAAACGCGAAGAGGGGAGCAAAAACAGTTTGGTAAATAATGAGTCTGACAAGGAAGCATGTAAATTGAAGTATGAATGTGACTTTTGTAATAAGTCTTTCCTCTACCCATCCACCTTAAAAAATCACTATCGtactcatactggtgagaaaccgtttGAGTGTGAAGTGTGCAATAAACGTTTCGCTCtattaaatactttaaaaacaCACACGCGCACACATACTgatgagaaaccataccagtgtcaCATTTGTAAAAGGCAATTCGCGCAGTTAAGCAGTTTAAGTTGTCACAAATGTACTGGTGAGAAGCGTTCTGCTGATGAAATAGAAGATTCCGAAAAAAGTCaaccaaagaaaaaaaaatcaccagTAAATGAGAATCACAAAAAAGCGAATACAGCTGAGTATAAATGTGgcttttgtaataagtgtttcccTAGCCCATCCAGTTTAAATACCCATAGTCGCatgcatactggtgagaaaccatatcagtgtgacgtatGTTATAAGAGCTTTGCTCAATTACACCATTTAAAGAGACACAGTTCAGTGCATACTGAtaagaaaccgtatcagtgtgacatttgtaataagcaatttatgaaaataaacgttttaaatCGCCACAAACTTAAACATACTGGAGAGCAAGGTTCTGCTGACGAAATAcaagaatttgaaaaaagtatacAGGAAAACGAAAATGACCCAACAAATAAAGAGATATGCAAATATTCTAGTAAAATCGAGTATAAATGTGAGGTTTGCAATAAGTGTTTCCCACACTTAGTTGGTTTAAAAAAGCACAAGCGCATACATCTGAAGCCATataaatgtgacatttgtaacaAGCAATTTTCTGAATTAACTAATTTGAGAAGACACAAAtatacacatactggtgagaagcgaTTTATGTGTGACGTGTGTAGTAGGCGTTTTACTGAGATGGCCCATTTAAACAatcacaaacgtacacataccggtgaaaaaccgtatcagtgtgacgtttgtaatagaTACTTTGCATACTTAAACGATTTATCAAGGCACAAACGTACGCATACaggtgaaaaaccatataaaTGTGACGTATGCAATAAGCAATTTGTTCAATCACAACATTTGAAAgttcacaaacgtacacatactggcgagaaaccttaCGAGTGTGACGTATGTAACAAACGTTTCGCCAGAGCAAGCTGTGTAAAGATTCACAAACGTACGCATACAGGTGAGAGACCATATccgtgtgacgtttgtaacaaGAGCTTTACTAGCTCACGTCATTTATCAACTCACAAACGTatccatactggtgagaaaccgtatcggTGTGATGTGTGTAATATGTGTTTTACCTATTCATTCAGTTTAAAGAAACATAAAACCACACATTTATAA
Protein Sequence
MVEIAVNMSQLDRMCRLCLSTGVALLNIFQSPAKTKSRVADLIMQCAPVKIKKCDEMPNFICRLCYTKLEKNHQFQTQIVQSEKTLRRYIQQLHTSDGQIKTECSEHFLIRDVNAYNATVNSQISTECADNTVERFSRNDNCEISCEDTKNDFDIDLNWKEKEHANFNSENKVKEETTFNFGIKDELITDDNSLNTSERADDLFDNFSKCYGGGISCKDPIIDMNGTLRSLERTYSADTIGNFDKREEGSKNSLVNNESDKEACKLKYECDFCNKSFLYPSTLKNHYRTHTGEKPFECEVCNKRFALLNTLKTHTRTHTDEKPYQCHICKRQFAQLSSLSCHKCTGEKRSADEIEDSEKSQPKKKKSPVNENHKKANTAEYKCGFCNKCFPSPSSLNTHSRMHTGEKPYQCDVCYKSFAQLHHLKRHSSVHTDKKPYQCDICNKQFMKINVLNRHKLKHTGEQGSADEIQEFEKSIQENENDPTNKEICKYSSKIEYKCEVCNKCFPHLVGLKKHKRIHLKPYKCDICNKQFSELTNLRRHKYTHTGEKRFMCDVCSRRFTEMAHLNNHKRTHTGEKPYQCDVCNRYFAYLNDLSRHKRTHTGEKPYKCDVCNKQFVQSQHLKVHKRTHTGEKPYECDVCNKRFARASCVKIHKRTHTGERPYPCDVCNKSFTSSRHLSTHKRIHTGEKPYRCDVCNMCFTYSFSLKKHKTTHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-