Vnig013706.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
-
Assembly
GCA_034508555.1
Location
JAVRKA010000041.1:85453-88663[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 9.5e-06 0.00026 21.8 2.7 1 23 495 517 495 517 0.98
2 12 0.00043 0.012 16.6 2.4 1 23 523 545 523 545 0.98
3 12 0.012 0.32 12.1 1.5 1 23 551 573 551 573 0.98
4 12 0.00034 0.0095 16.9 0.3 1 23 579 601 579 601 0.98
5 12 1.4e-06 3.9e-05 24.4 2.1 1 23 610 632 610 632 0.99
6 12 0.00023 0.0064 17.4 2.7 1 23 638 660 638 660 0.98
7 12 0.00037 0.01 16.8 1.6 1 23 666 688 666 688 0.99
8 12 1.2e-05 0.00032 21.5 1.6 1 23 694 716 694 716 0.99
9 12 8e-05 0.0022 18.9 3.9 1 23 722 744 722 744 0.96
10 12 4.2e-06 0.00011 22.9 0.9 1 23 750 772 750 772 0.99
11 12 3.2e-05 0.00089 20.1 0.7 1 23 778 800 778 800 0.98
12 12 3.3e-05 0.0009 20.1 2.7 3 23 808 828 806 828 0.98

Sequence Information

Coding Sequence
ATGTCCGACACagtatttattgaaagaaaaaattcaaaaacaataaaaatctcTAAAAATGAATCGAAAGAAGattatattaagaaaataacGTATTTATACATGAACGATAATTCTATAACAAAAATTggtCGATTAAATCCATGTGAAAAATTATCGGTACTGTATTTGCAAAATAATCGAATAAGAGTGATAGAAAATTTAGACTGCAGTAAAAACTTAACTCGTCTGtatcttcaaaataatttaatcaaaaaaattgaaaatctgcACAGtttgtgtaatttaaaaaagcTTTACCTGAGTCATAACTGCATTAGCGTTATCGAAGGGCTCGATAACTTGATAAATTTAGAAGAGTTACACGTCGAAAAACAACATCTCGAACCCGGGGATAGTCTTTGCTTCGATCCGAGATCGATTAACGCCATCAAGGACAATTTGgctgttttaaatatttcaaattgtaATTTGACAACGTTAAAAGAACTAGCACCCTTGCACAATTTGACGGTATTGATTGCCAAAAATAATTCAATCGAAGAACTTGACGAACTAATAGATGTTTTGAAGAATTGGATTTTTATTGGCAACGTGAATTTCAATGGAAATCCTGTAAAAAAGAAACACCGTTACAGAGAAACATTAATTGTAAACACGCACACGTTGGAAATAATCGATGAAAAACAAATCAACGTTAACACTCGAGAATTTTTAAAGAACATGGAACGAGAAAAACGCTTGTTTGAAAAAAGGAAAGAGGGAGCTCGTCAATTTCCTGCAAACGATAAAATTGAAGAATTATCGAAATCAGTACCGCCACCGATAACAAATCTCGTTTCAAAATCGATACTGTGTAAAATAACAACGGATACGAAATCATCGAAAGCTTTTTCAGTTTCGTCGGCCGTTAACAATAACGAATTAATACCCGATATGTTGGACGAAACGGTGTGTTTGGTCGGGAACGGGGAAACACTGAACGAGATATTTACGTTTTCATCAAAACTGAAAGGGATTATCGCGGATGTTTTAATGAAATGTGCTCCTGTACAGATTCTACAGAACGACGGTCTGCCTTTGATGATATGCCAGACGTGTTTAAGAAAGCTCGAATCGGCCTATCGGTTTCAACTACTAGCGATACAAACTGAAAAGTCTCTTCGAGTCATAATCGGCAACGGTCGCGACGATAAATACGAAGACATTTTATCATTATGCAAAGATAAATTATCAGTCGATGGCACTGGTCAATTACAAgataattttgatgaaaactgTTTGATCGAAATTAAAGAGAGAAAAACAGAGGATTTATCGGATAAAGCGACGACaaattcgatattttcggaCAACAGCGGTCACGAcggttttgaaaatgaattaaacGATACGAAGAGCGATGTGTTCGAAGGCAACGCAGAAGATACAAAActaacgattaaaataaaaagaaaacgtttAGCTACGCGGAAAAAATCTTACCCGTGCAACGTGTGTAAAAAACGGTTCGTTGACTCGACGcatttaaataatcataaacgcgTCCATAGCGGTGAAAAACCGTTTCCGTGCGATTTCTGTGACAAATGTTTCAGCGACATCGGAAACCGAAACGTTCACAGAAAAACCCACACCGGAGATAAAAAACATCAGTGCGACGTCTGCATGAAGCGCTTTGTGTTTCCCAGCGTGTTAAACTCTCACAAACGCGTTCACACGGGGGAAAAGCCGTTTCGGTGCGACGTGTGCGATTTACTTTTTGCTCGCTCGGGCGAATTAAATACTCATAAAAGACTTCATACGATCGACAGAATCGACAACCGATATCGATGTAGTACTTGCGAGACGACTTTCAGTGACAATTCTAGTCTGAACAGACATCGGCGCGTTCACGAAGGCATCAAAAGTCACAAGTGCGACGTGTGCACCAAAGGTTTTTTTACATCGAGCGCGATGACGGCGCATAAACGTACGCATACCGGTGAGAAAAATTATCAGTGCGATTTTTGCGGAAGATGTTTTTTGGCTGCCGGAAATTTGCAGAAACACCGCCGCATTCATACGGGCGAGCAACCCTACCAATGCGAGATATGCAAGCGCCGTTTCAATCAAATGAACAATCTGACGATACATCGACGAGTCCACAGTGTCGAACGGCCGTATCTCTGCGACGTTTGCGACAAGCGCTTTAAACATTTGCGCAGTCTTAAAATACACAAGAGAACTCACACGGGAGTCAAACCTTATCGGTGCGAGGTCTGCGATAAGCGCTTTAACGATTTGGGCTACTTAAATATACACAAACGTACGCATACCGGTGAGCGTCCTTATCCGTGCGACGCGTGCGGAAAACGATTCAACGAATCGAGCAAACTGACCATCCATAAGAGAACGCATACGGGCGAAAAACCGTACGGCTGCGACGATTGCGAGAAAAGGTTCACTCGGTTAGATCACTTAAACTTACACAAACGGACGCACAGACGACAATCCGTCCGATAA
Protein Sequence
MSDTVFIERKNSKTIKISKNESKEDYIKKITYLYMNDNSITKIGRLNPCEKLSVLYLQNNRIRVIENLDCSKNLTRLYLQNNLIKKIENLHSLCNLKKLYLSHNCISVIEGLDNLINLEELHVEKQHLEPGDSLCFDPRSINAIKDNLAVLNISNCNLTTLKELAPLHNLTVLIAKNNSIEELDELIDVLKNWIFIGNVNFNGNPVKKKHRYRETLIVNTHTLEIIDEKQINVNTREFLKNMEREKRLFEKRKEGARQFPANDKIEELSKSVPPPITNLVSKSILCKITTDTKSSKAFSVSSAVNNNELIPDMLDETVCLVGNGETLNEIFTFSSKLKGIIADVLMKCAPVQILQNDGLPLMICQTCLRKLESAYRFQLLAIQTEKSLRVIIGNGRDDKYEDILSLCKDKLSVDGTGQLQDNFDENCLIEIKERKTEDLSDKATTNSIFSDNSGHDGFENELNDTKSDVFEGNAEDTKLTIKIKRKRLATRKKSYPCNVCKKRFVDSTHLNNHKRVHSGEKPFPCDFCDKCFSDIGNRNVHRKTHTGDKKHQCDVCMKRFVFPSVLNSHKRVHTGEKPFRCDVCDLLFARSGELNTHKRLHTIDRIDNRYRCSTCETTFSDNSSLNRHRRVHEGIKSHKCDVCTKGFFTSSAMTAHKRTHTGEKNYQCDFCGRCFLAAGNLQKHRRIHTGEQPYQCEICKRRFNQMNNLTIHRRVHSVERPYLCDVCDKRFKHLRSLKIHKRTHTGVKPYRCEVCDKRFNDLGYLNIHKRTHTGERPYPCDACGKRFNESSKLTIHKRTHTGEKPYGCDDCEKRFTRLDHLNLHKRTHRRQSVR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01530779;
90% Identity
-
80% Identity
-