Vnig005999.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000012.1:621403-623031[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 5e-06 0.00014 22.7 1.7 1 23 157 179 157 179 0.99 2 11 0.0002 0.0055 17.6 1.8 1 23 185 207 185 207 0.97 3 11 3.5e-07 9.6e-06 26.3 6.7 1 23 213 235 213 235 0.98 4 11 2.9e-06 8e-05 23.4 0.9 1 23 241 263 241 263 0.99 5 11 2.4e-06 6.7e-05 23.7 3.3 1 23 269 291 269 291 0.99 6 11 5.9e-06 0.00016 22.5 4.2 1 22 297 318 297 318 0.96 7 11 0.00024 0.0066 17.4 2.0 1 23 325 347 325 347 0.97 8 11 2.8e-05 0.00077 20.3 0.6 1 23 353 375 353 375 0.98 9 11 2.7e-05 0.00074 20.4 0.9 1 23 381 403 381 403 0.99 10 11 2.1e-05 0.00059 20.7 2.5 1 23 409 431 409 431 0.99 11 11 1.5e-05 0.00042 21.1 2.7 1 23 437 459 437 459 0.98
Sequence Information
- Coding Sequence
- ATGGAACTACAAATGATGTCTAATTTCAACAATGTGTGTAGAATCTGTTTAATTGGAGGTATCGAACTGTTTGATATTTTCACCTATTCCGGTAAAATAGGCGGATATGTTGCAGATGCCATTATGGCATGCATTCCCGTTCAGATAACCAGACAAGATGGACGTCCCTCGTTTATATGCCAGCAGTGTTATGGCCAGCTCGAAGTTGCTCACCAGTTTCGTACACTCGCTTTAAAGTCGGAAAATATTCTGCAGGGATACTTCCAGAAACTGAGCCAGACTCACTGTGAAACGGCCGTGTCGCTGATGAATCCGACACACTTCTTGAGTTCGCAAACGTTTAAAGCCGACGCACCAAAAACCGATGTTAACAATCCGGTTCCAAACGTTGAGTTTGAGAAGAAAGCCGTCGCCAAAGAAAATATAGTCAAACCGAAAGTAGTCATCGACAAGACACTGGACAAACCTTACCAATGCGACGGGTGCCCACAGGCGTTTCGTCACCAGAGAAACTTGGTCGTTCACAAACGGAAACATACCGGAGAGCGACCGTACAAATGCAGACAGTGCAACAAAAGTTTCTCGATTCTGAGTACGCTCAAACAGCACGAAGGCACGCACCTCGGCTTGAAACCGTTCGAATGCagttactgtaaaaagtgtttttcacAGAACAGCAACTTGATGCGACACAAACGAACGCACACCGGGGAAAAGCCGTACCGGTGCGAGACGTGTGACAAACGGTTTTCCGACTCGAACGGTCTCGTTCTCCACCAGCGCTCGCATACTGGGGAGAAGCCCTATGAATGCAATGTGTGCAGCAAGCGGTTCATCAGTTCGAGCCATCTCATCACGCACAAACGAACCCACACGGGCGTCAAGCCCTACAGCTGCGACATTTGCCAGAAACGGTTCACTCACCAAAGCCACTTGAAAGTACACCGACGCAAGTGCACCGGTAACAACTTGCACGAGTGCGAACTATGCGACAAGACCTTCACCAGTCTGGGCCGCTTCAACATCCACAAACGCGTACATACCGACGAGAAACCGTTCGTTTGCAGTTTCTGCGACAAGGCGTTTTCCAGTTCGAGCGGAATGGTCCAACACCAAAAATTGCACACGGACGAACGTGCGTTCCGCTGCGATGTGTGCGAGGCGGCGTTCGTCAATTCGAGTCACTTGGCGTCGCACAAGCGCCGTCACAAGGACGAGAAGCCCTACCGATGCGACATCTGCGAAAAACAATTCACCGGACTGAGTTTTCTCAAGAAACACAAACGCACTCACATGAGCGAGAAACCGTATCGGTGCGAAGTTTGCGCGAAGAGGTTCACCAAATCGGGAAACTTGAAGAAGCATAAACAGAAGCACGATGCCGATCAGTGCAGAGACGACGAGACCGGTCCGACGACCGGCGACGTTTAG
- Protein Sequence
- MELQMMSNFNNVCRICLIGGIELFDIFTYSGKIGGYVADAIMACIPVQITRQDGRPSFICQQCYGQLEVAHQFRTLALKSENILQGYFQKLSQTHCETAVSLMNPTHFLSSQTFKADAPKTDVNNPVPNVEFEKKAVAKENIVKPKVVIDKTLDKPYQCDGCPQAFRHQRNLVVHKRKHTGERPYKCRQCNKSFSILSTLKQHEGTHLGLKPFECSYCKKCFSQNSNLMRHKRTHTGEKPYRCETCDKRFSDSNGLVLHQRSHTGEKPYECNVCSKRFISSSHLITHKRTHTGVKPYSCDICQKRFTHQSHLKVHRRKCTGNNLHECELCDKTFTSLGRFNIHKRVHTDEKPFVCSFCDKAFSSSSGMVQHQKLHTDERAFRCDVCEAAFVNSSHLASHKRRHKDEKPYRCDICEKQFTGLSFLKKHKRTHMSEKPYRCEVCAKRFTKSGNLKKHKQKHDADQCRDDETGPTTGDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01530742;
- 90% Identity
- iTF_01530742;
- 80% Identity
- -