Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000031.1:2849058-2850800[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.008 0.22 12.6 1.6 1 19 185 203 185 207 0.95

2 14 3.4e-06 9.3e-05 23.2 2.5 1 23 212 234 212 234 0.98

3 14 0.01 0.29 12.3 6.9 1 23 240 262 240 262 0.97

4 14 0.011 0.31 12.1 3.7 1 23 268 290 268 290 0.98

5 14 2.2e-06 6.1e-05 23.8 0.3 1 23 296 318 296 318 0.99

6 14 3.4e-06 9.3e-05 23.2 2.5 1 23 324 346 324 346 0.99

7 14 3.5e-05 0.00095 20.0 2.6 1 23 352 374 352 374 0.98

8 14 5.7e-05 0.0016 19.4 1.8 1 23 380 402 380 402 0.99

9 14 2.1e-05 0.00057 20.7 5.2 1 23 408 431 408 431 0.97

10 14 0.00013 0.0035 18.3 1.9 1 23 437 459 437 459 0.99

11 14 7.9e-07 2.2e-05 25.2 0.4 1 23 465 487 465 487 0.98

12 14 0.018 0.5 11.5 3.6 1 21 493 513 493 515 0.94

13 14 0.016 0.43 11.7 6.1 1 23 521 543 521 543 0.97

14 14 5.4e-05 0.0015 19.4 1.5 2 23 549 571 549 571 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.008	0.22	12.6	1.6	1	19	185	203	185	207	0.95
2	14	3.4e-06	9.3e-05	23.2	2.5	1	23	212	234	212	234	0.98
3	14	0.01	0.29	12.3	6.9	1	23	240	262	240	262	0.97
4	14	0.011	0.31	12.1	3.7	1	23	268	290	268	290	0.98
5	14	2.2e-06	6.1e-05	23.8	0.3	1	23	296	318	296	318	0.99
6	14	3.4e-06	9.3e-05	23.2	2.5	1	23	324	346	324	346	0.99
7	14	3.5e-05	0.00095	20.0	2.6	1	23	352	374	352	374	0.98
8	14	5.7e-05	0.0016	19.4	1.8	1	23	380	402	380	402	0.99
9	14	2.1e-05	0.00057	20.7	5.2	1	23	408	431	408	431	0.97
10	14	0.00013	0.0035	18.3	1.9	1	23	437	459	437	459	0.99
11	14	7.9e-07	2.2e-05	25.2	0.4	1	23	465	487	465	487	0.98
12	14	0.018	0.5	11.5	3.6	1	21	493	513	493	515	0.94
13	14	0.016	0.43	11.7	6.1	1	23	521	543	521	543	0.97
14	14	5.4e-05	0.0015	19.4	1.5	2	23	549	571	549	571	0.97

Sequence Information

Coding Sequence: ATGAATGAACATAACTCGGTCACAAACAATTTAACCCAGAACTCATTACAACATAGAAATAATCAAGAGTTTGATAAAAACTCTACAACATATGATTATAATTGCaatgaaaataatacaaacataGTTATTgacgcaataaaaataaataaagaatcagACAACGATGAAAAACTAAACAATTATGCATATGGAAATAActtgattaaagaaaaaatttctaaGGAAGTTTTTGATAATTTCATACAGAAATTAGAAAGTGAAGGAAATTATGAATTGTCTTATTCTGACGACGACACATTGGCATCTAAAATCAAAGTAGAAGAAACAAAAGTGAACTTAAAAACTGAAACTGTCGAAAGAAAAACAACTTACCAACATATTTGCTTTAAAAGTTTTGAAGAACGTTTTGAGCCACACAGATGTCCATACGTTTTCAAAATTAACTATAAATACGTAAATTCAAAAAGCAACAGTGTAAATAAACAATCCAAGATGAACACGgagaaaactttaaaaacagACAAATACTTTGCTTCAACTGAAAAGAATTATCAATGTACTGATTGTTCGACATGTTTTCCAACTGTAAATAATTTGCTTGAACATAAGCCTCTTCATTCTAGTGAACTCTATCAATGCAATGATTGCTCAAAATGTTTTTCGTCGTCGGATAACTTACTAGAACACAAACTTATTCATGCGAGTGAGCAACTTTACTATTGCGCCGAATGTCCCAAGTGTTTCCGAACGAAGTGTTGCTTGGCTTCTCATGAAATTCGTCACACAAAACAAAAGCCGTTCCAATGTGTAGTCTGCAGCAAAAGATTTAAATGTTCAAGTGACCTTGGTAAACACAAGCGTATTCATACTGGTGTGAAACCTTACCAGTGTGAAATCTGCGACAGACGTTTCACAGAAGCCGGTAATTTGATAACGCATAAACGAATCCATACAGGTGAAAAACCGTACGAATGTGAAGTGTGCAACAAATCTTTCGCAAGAATGGACCATTTGTCAAACCATAAACGCACACATACAGGCGAGAAACCTTATCACTGTCAAATTTGCAACAAACGTTTTACGGCAAAGTACAGTTTAACCATACACGTACGCATCCATTCAGGAAACAAACCTTATCAATGCGAAATATGCTACAAACGTTTCACAGCCACAAACGACTTGCGCAAACACGAACGTACTCATTCAGGTTCAAAAccatttaaatgtaatatttgcaATAAGAATTTCTCGCAATCGACACATTTAAATTCGCACAATCGTCGCCAACATACAAAAGacaaaccatatcaatgtgaagTTTGTCAGAAACGGTTTGCAATGACtcagtatttaacaaaacataaacgtgtgcatactggtgaaaaaccgtaTGAGTGTAATGTGTGTGATAAGAAATTTGCGTCGCAAAGTAATCTTATAACTCATAAACTTGTACACGCGGATATAAGACGTCATCAATGTAGTATTTGTAAGATGAGGTTTATTGGATCAGGCGATTTGAAGAGACATAGTCGGTGTCATACAAATGAAAGACCCTATCGTTGCGACATTTGCTGTAAGGGTTTCCGACGATCAAATCATTTGAGTCGACATAAACTTTTGCATTTGAACGAACTAAACCGATGTGAAGTTTGCGGCAAAAGTTATGTTCGAAAAGTGTGTCTTATCAAGCATAAACGGGTTGTCCATCGCGTAAATTTTGCTCCatctgtaaattaa
Protein Sequence: MNEHNSVTNNLTQNSLQHRNNQEFDKNSTTYDYNCNENNTNIVIDAIKINKESDNDEKLNNYAYGNNLIKEKISKEVFDNFIQKLESEGNYELSYSDDDTLASKIKVEETKVNLKTETVERKTTYQHICFKSFEERFEPHRCPYVFKINYKYVNSKSNSVNKQSKMNTEKTLKTDKYFASTEKNYQCTDCSTCFPTVNNLLEHKPLHSSELYQCNDCSKCFSSSDNLLEHKLIHASEQLYYCAECPKCFRTKCCLASHEIRHTKQKPFQCVVCSKRFKCSSDLGKHKRIHTGVKPYQCEICDRRFTEAGNLITHKRIHTGEKPYECEVCNKSFARMDHLSNHKRTHTGEKPYHCQICNKRFTAKYSLTIHVRIHSGNKPYQCEICYKRFTATNDLRKHERTHSGSKPFKCNICNKNFSQSTHLNSHNRRQHTKDKPYQCEVCQKRFAMTQYLTKHKRVHTGEKPYECNVCDKKFASQSNLITHKLVHADIRRHQCSICKMRFIGSGDLKRHSRCHTNERPYRCDICCKGFRRSNHLSRHKLLHLNELNRCEVCGKSYVRKVCLIKHKRVVHRVNFAPSVN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01530721;
90% Identity: -
80% Identity: -