Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000040.1:1404641-1406357[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.25 6.8 7.9 1.6 1 22 179 200 179 203 0.91

2 12 0.012 0.33 12.1 1.7 1 23 209 230 209 230 0.97

3 12 4.2e-06 0.00012 22.9 0.8 1 23 236 258 236 258 0.98

4 12 0.00055 0.015 16.3 0.2 1 23 264 286 264 286 0.98

5 12 0.00041 0.011 16.7 1.4 1 23 292 314 292 314 0.98

6 12 7.9e-05 0.0022 18.9 3.2 1 23 342 364 342 364 0.97

7 12 0.0032 0.089 13.8 3.5 1 21 369 389 369 391 0.92

8 12 9e-06 0.00025 21.9 0.9 1 23 397 419 397 419 0.97

9 12 6.8e-07 1.9e-05 25.4 0.1 1 23 425 447 425 447 0.98

10 12 3.5e-08 9.6e-07 29.5 5.6 1 23 453 475 453 475 0.99

11 12 1.3e-06 3.7e-05 24.5 0.2 1 23 481 503 481 503 0.98

12 12 2.3e-06 6.3e-05 23.7 1.3 1 23 509 531 509 531 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.25	6.8	7.9	1.6	1	22	179	200	179	203	0.91
2	12	0.012	0.33	12.1	1.7	1	23	209	230	209	230	0.97
3	12	4.2e-06	0.00012	22.9	0.8	1	23	236	258	236	258	0.98
4	12	0.00055	0.015	16.3	0.2	1	23	264	286	264	286	0.98
5	12	0.00041	0.011	16.7	1.4	1	23	292	314	292	314	0.98
6	12	7.9e-05	0.0022	18.9	3.2	1	23	342	364	342	364	0.97
7	12	0.0032	0.089	13.8	3.5	1	21	369	389	369	391	0.92
8	12	9e-06	0.00025	21.9	0.9	1	23	397	419	397	419	0.97
9	12	6.8e-07	1.9e-05	25.4	0.1	1	23	425	447	425	447	0.98
10	12	3.5e-08	9.6e-07	29.5	5.6	1	23	453	475	453	475	0.99
11	12	1.3e-06	3.7e-05	24.5	0.2	1	23	481	503	481	503	0.98
12	12	2.3e-06	6.3e-05	23.7	1.3	1	23	509	531	509	531	0.97

Sequence Information

Coding Sequence: atgacagaaacagtatataaattaaacagtATATGCCGAACATGCTTATCCGAAGGAGAATTGTTGTCATTATTCCTAGTTGAAGGTTCCATAAAACTTTCGGATATGCTGATGGCGTGCGCTTCGGTACAGATCGCCGAAGATGATGGCTTTCCACCATATATATGTACAGATTGCACAAGTAAGACTAAACAAGCGTTTTTATTTAGACAACAATGTGAAAAATCTGATGTTATGCTTCGTTCTACTGTGTATTTAGAATCTGAGACGGAACCAACAGTTGGTGATATTTTACAAAACGATTGCCTAATCGAAGCAGCAGCAAAAAGTAGAacaatttttaatgataattcgagtaatgaaaatattttttatgattctgAGCATTATCTCGGTGAATCTGATGAGAATATTAATAACGGTAATTgcgataaaaatttaaatgatgaTATTGAAAAACCCGTTCGGAAAAAAGTTAGGGACTCAAAATCACTAAGGAAAAAACATACAAACATTCAAAACGTGTCAAATAAATTTACTTGTCGCAAATGCAAAGTAAAATTTCAAACACGACTGGGGTTGAGtgaacatattaaaaatgtaaaacatcCAGCCATTAAAGATCATGTTTGCAATATTTGTTTGAAACCAATTACTCCACGTCATTTGAAGGAGCATATTAGAACTCATACCAAAGAAAAGCCGTACACCTGTGAAATTTGCGGCCAGCAATTTAGTCTAAATTATAATCTCCGTAGACATGCCATGAGACATACAGGGGAACGCCCGTATCGCTGTCAGTTTTGTAATAAAGGATTCATACAAGCCCGAGCAATGGAAGATCATGCAAGAGTTCACACTGGCGAAACTCCATATTTTTGTTCACTTTGCGGAAAGCTGTTTGCTACAAGCATGCAATTAGGCAAACACAAAAAGACACACAATAAGGAAAATCAGATCACTGTAAAGAAAAGAGTTTCTTGGGGATCTAAAAGAAAATCACAAGCAAATGACGAACGTCCTTTTACATGCAACATATGTCATAAAGGATACACAACTCAAACAGGACTAAAAACACATCAATTCATACATGGAGATAAAAAATTTTTGTGTAGCTTTTGCGGTAAAGGTTTCGTCACTAAACAACAACTACAACTGCACACTCGATGCCATACAGGGGAAAAACCGTATCGGTGTGAAGTTTGTAATAAATCGTTTTCGCGAATGAATTCGTTGAAATCGCATTTAGTTGTTCATTCGCCAGAAAAGAAATTTCCGTGCCCTATTTGTGGTAAAGAATTTATACGTTCTATAACGTTAAAAACTCATATGTTAATTCATACTGGTCTGAAGCCTTTTAAATGTCAATTATGTGATAAATCGTTTACCCAGAGTAGTCATTTAAAAACTCATATGAGAACTCATAATGGAGAAAAACCGTATGCATGTGCTGTTTGTAACAAACAGTTTGCACAGAATACAAATTTGACAGTTCATATGAGAATTCATACAGGTGAAACTCCCTATGTTTGTCCGATTTGTGGAAAAGGGTTTTATGATTCTAGCAGTATGAAGAAACATCATAAAGGGCATGCAGTGTAG
Protein Sequence: MTETVYKLNSICRTCLSEGELLSLFLVEGSIKLSDMLMACASVQIAEDDGFPPYICTDCTSKTKQAFLFRQQCEKSDVMLRSTVYLESETEPTVGDILQNDCLIEAAAKSRTIFNDNSSNENIFYDSEHYLGESDENINNGNCDKNLNDDIEKPVRKKVRDSKSLRKKHTNIQNVSNKFTCRKCKVKFQTRLGLSEHIKNVKHPAIKDHVCNICLKPITPRHLKEHIRTHTKEKPYTCEICGQQFSLNYNLRRHAMRHTGERPYRCQFCNKGFIQARAMEDHARVHTGETPYFCSLCGKLFATSMQLGKHKKTHNKENQITVKKRVSWGSKRKSQANDERPFTCNICHKGYTTQTGLKTHQFIHGDKKFLCSFCGKGFVTKQQLQLHTRCHTGEKPYRCEVCNKSFSRMNSLKSHLVVHSPEKKFPCPICGKEFIRSITLKTHMLIHTGLKPFKCQLCDKSFTQSSHLKTHMRTHNGEKPYACAVCNKQFAQNTNLTVHMRIHTGETPYVCPICGKGFYDSSSMKKHHKGHAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01530656;
90% Identity: -
80% Identity: -