Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000015.1:5038471-5040171[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 7.6 2.1e+02 3.2 0.4 5 22 186 203 183 206 0.85

2 11 0.00022 0.0061 17.5 1.5 1 23 211 232 211 232 0.98

3 11 8.7e-06 0.00024 21.9 0.6 1 23 238 260 238 260 0.99

4 11 8.4e-06 0.00023 22.0 3.1 1 23 266 288 266 288 0.98

5 11 1.3e-06 3.5e-05 24.6 3.6 1 23 294 316 294 316 0.98

6 11 2.9e-06 8e-05 23.4 3.8 2 23 336 357 336 357 0.97

7 11 0.00051 0.014 16.4 5.0 1 23 362 384 362 384 0.96

8 11 2.3e-06 6.4e-05 23.7 0.2 1 23 390 412 390 412 0.98

9 11 5.3e-07 1.5e-05 25.8 1.4 1 23 418 440 418 440 0.98

10 11 2.1e-07 5.9e-06 27.0 1.0 1 23 446 468 446 468 0.99

11 11 6.3e-06 0.00017 22.4 0.4 1 23 474 496 474 496 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	7.6	2.1e+02	3.2	0.4	5	22	186	203	183	206	0.85
2	11	0.00022	0.0061	17.5	1.5	1	23	211	232	211	232	0.98
3	11	8.7e-06	0.00024	21.9	0.6	1	23	238	260	238	260	0.99
4	11	8.4e-06	0.00023	22.0	3.1	1	23	266	288	266	288	0.98
5	11	1.3e-06	3.5e-05	24.6	3.6	1	23	294	316	294	316	0.98
6	11	2.9e-06	8e-05	23.4	3.8	2	23	336	357	336	357	0.97
7	11	0.00051	0.014	16.4	5.0	1	23	362	384	362	384	0.96
8	11	2.3e-06	6.4e-05	23.7	0.2	1	23	390	412	390	412	0.98
9	11	5.3e-07	1.5e-05	25.8	1.4	1	23	418	440	418	440	0.98
10	11	2.1e-07	5.9e-06	27.0	1.0	1	23	446	468	446	468	0.99
11	11	6.3e-06	0.00017	22.4	0.4	1	23	474	496	474	496	0.98

Sequence Information

Coding Sequence: ATGgacgaaaataatataatacaaattgTTAACGCAGACGAAATTTGCCGTGCTTGTTTGTCTGAAGGAGAATTGCAACCAATTTACATAACTAAAATAGAAGATCATCATTTAACATTATCAGAAATGTTAATGGCCTGCGCTTCAGTTCAGGCATCTGAAGGAGACGGTTTACCAAGTAAAATGTGCATAGGCTGCATTTCACAAATAAATCAAGCATTTTCTTTCAAAAGACAGTGTGAAGAATCAGATGCAACTCTTCGTTTGTATCTTTTCAATCGAATGTCTACAAATCAGGAAATATCGTTCAGTGACAATgtaaagaaagaaataaaagtAGAGTCGGAAACTCATTTAGAAGAACGAAACGAAGTTGATGACGAAATAATAGTTGAATACGACAATCCTtatgatttaaatgaaatgagAACGAATGAAAAGAGTCAAGATCATCAAGAAAATGATTCGGTTGTTCAAATAGCAAAACGTAAAAAAGACGAGAAAGCAAAACGACGCAGAACGACCgctgtgaaaaaaaatatcaatgaatGTATAAATTGTAAACTTCAGTTTGCTTCACGAGCCGAATATTTAGATCACGTAAGAAACAAAAAACATCAAAGACAATGCTATACGTGTaacgtttgcaataaaagttttacGGGTTATCGACTCAAAGAACATATGCGCATCCATACTCAGGAAAAGCCGTATACATGTGACGTTTGCGGTTCGCAGTTCAGTCTTAGTCGTAATTTACGACGACATATGATGATTCATACCGGGGAACGACCTCATAAGTGCCAATTCTGTAACAAAGCTTTCAATCAATCGACTGCGTTGACCGTTCATCTAAGAACGCATACAGGGGAAACCCCTTTTGTTTGCAGCACTTGCGGAAAGAAATTCAGGCACTCTGTTCAGTTGACATCTCACATAAGAAAGCATGAATTGAACGACGATGACAATAAacacttaaaacaaaaacaaaattatacgaTGCCAACCTGTAAGATTTGCAACAAATCGTTCTCAACTAATAGTTGCCTGAATACTCATATGTTAATTCATGGGCCTAAAAAGTTTTTATGCAGTCATTGCGGAAAAGGTTTTTCGAGAAAGCCCGGATTGAAGTGTCATATGAAAACACATACAGGTGAAAAGCCTTATCCGTGCCAAACTTGCGGGAAATCGTTTTCTCAAATAGGCACCTTAAAAGCACATCAGTTAATACATACGGGAGAGAAACCTTATATTTGTACAATATGCGACAAATCTTTCAAGCAGAAAAATCAGTTGACCTATCACGTGCGTATTCATAGTGGGGAGAAACCTTACACCTGTTCTGTTTGTGATAAGAGTTTTTCACTTAAAGGAAATATGACGGTACATATGAGAACTCATACAGGGGAAACTCCATATGTTTGTCCGGTGTGTGAAAAAGGTTTTTACGATTCTAGTAGCATGAAAAAACATTGGAGGAATCATAAAACTGGGgataattgtaaaatataa
Protein Sequence: MDENNIIQIVNADEICRACLSEGELQPIYITKIEDHHLTLSEMLMACASVQASEGDGLPSKMCIGCISQINQAFSFKRQCEESDATLRLYLFNRMSTNQEISFSDNVKKEIKVESETHLEERNEVDDEIIVEYDNPYDLNEMRTNEKSQDHQENDSVVQIAKRKKDEKAKRRRTTAVKKNINECINCKLQFASRAEYLDHVRNKKHQRQCYTCNVCNKSFTGYRLKEHMRIHTQEKPYTCDVCGSQFSLSRNLRRHMMIHTGERPHKCQFCNKAFNQSTALTVHLRTHTGETPFVCSTCGKKFRHSVQLTSHIRKHELNDDDNKHLKQKQNYTMPTCKICNKSFSTNSCLNTHMLIHGPKKFLCSHCGKGFSRKPGLKCHMKTHTGEKPYPCQTCGKSFSQIGTLKAHQLIHTGEKPYICTICDKSFKQKNQLTYHVRIHSGEKPYTCSVCDKSFSLKGNMTVHMRTHTGETPYVCPVCEKGFYDSSSMKKHWRNHKTGDNCKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01530687;
90% Identity: iTF_01530687;
80% Identity: -