Vnig020187.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000094.1:9197-10935[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0033 0.091 13.8 1.5 2 23 184 205 183 205 0.95 2 12 0.00014 0.0039 18.1 9.0 1 23 224 246 224 246 0.97 3 12 2.2e-06 5.9e-05 23.8 0.5 3 23 254 274 252 274 0.97 4 12 0.00031 0.0084 17.1 3.1 1 23 280 302 280 302 0.97 5 12 3.3e-06 9.2e-05 23.2 1.7 1 23 308 330 308 330 0.98 6 12 2.2e-07 6.1e-06 27.0 2.0 1 23 336 358 336 358 0.98 7 12 0.014 0.4 11.8 2.3 1 23 380 402 380 402 0.91 8 12 1.3e-05 0.00035 21.4 0.2 1 23 407 429 407 429 0.95 9 12 0.0029 0.081 14.0 1.1 1 23 435 457 435 457 0.92 10 12 1e-07 2.7e-06 28.0 1.4 1 23 463 485 463 485 0.99 11 12 4.8e-06 0.00013 22.7 0.4 1 23 491 513 491 513 0.98 12 12 0.00012 0.0032 18.4 4.3 1 23 519 541 519 541 0.98
Sequence Information
- Coding Sequence
- ATGGATTTGGAATGTAACTtgtctattattaattataattcgaTATGCAGAACCTGCTTTTCAATGGAAGACTTGATTTCCATACTAGACGATTCAAACACCAATAACACGTTCTCAACATTACGAATTGCTGATATGGTAATGGAGTGCGCTTCTGTGAAGATCGACATAGACGATGGTCTGCCTTCAAAAATATGTAGTAAATGTGTAATTCAAGTAAATCAAGCGTACTTGTTCCGGAAACAGTGTGAAAACGCCGATATTCGGTTGcgttctattttaaataatgaacgACATGAACTCAAAGAACGAGTTATCGACaatgaattaaatttagattataaCTTCACTAGTACTGAATCCGAtaacgcatttcaaaaaatctcaCATGTTGACACTCACACCGAACCTACCGGGCAGTCTTCTGATAATTCAACAGCCACAAACGAACGGACGTTGGCTTCTGAAAACAATTTAATCATACGTACTTTGATTCGCTCTAGTAGTATATCTGAAAATTACAATCTAGCGCAATTCAGAGAAAAATTGTCATGCCACTTGTgtaagaagatattattttctaaggCCAActtaataaaacacatttccTTACATAAGACGAATCCACGGACACACGTGGATTCGAAAAAAACCACCAGTCAAAAGGGACATCATTGTCACGACTGTGGTAAGAACTTTAGGAAAAAGACGCTGTTAAAAATTCATACGAGGACCCACACCGGTGAAAAACCTTTCGGCTGTAATGACTGCGATCGCAAATTCTCAGACCCTGCAAATTTACGACGTCATAAAATGATTCACACCGGCAAAAAACCTCACAGCTGTCATATATGCCACAAGGCGTTCATACAAGGCCCGTCGTTGACCGACCATTTGAGAATACACAGTGGTGAGCGGCCGTTCGAATGCACTTATTGCGAGAAAAGTTTCTCCTTAAAAGCCACTTTAACGAAACATCTCAGACTGCACACCGGTGAGACGCCTTTTGTTTGCAGTTTTTGCGGTAAATCGTTTCGCACTTCTGACTATTTGAGATTGCACATTAGAAAGCATACGGCCGCCGATGCACCGACAAAACGTGCGGCAAAACGAAACGGGTGTGACGCGGACAGATCCCACGCATGTTCTGTGTGCAAACGAAAGTACACATCGAAACAGAGTCTGAAAATGCATTCGGTTATTCACGGCGAAAAAAGCTTTTTGTGCAGCGAATGCGGCAAGGGATTCGTTAGTAAAGCCTCGCTGAAAAACCACGCCAAAGTTCACACCGGCCTTAAACCTTATCGATGCACTTTTTGCGCTAAATCGTTTTCACAGATCGGCGCACTGAAGAATCATAACTATCTACACACTGGAGAGAAGCCGTTCAAATGCAAAGTGTGCGACAAACCATTTACGCAACGCTCACAAGTTATAAACCACATGAGAACACACACCGGAGAGAAACCCTACGCGTGCTCGGTCTGCCAGAAGAATTTTTCTGTCAAGGCCTCGCTCACCGTGCATCTTAGAACTCACACGGGGGAAACGCCATACCATTGTCCGATTTGCACTAAAGGTTTCAACAGCTCCACCAACAtgacaaaacacaaaaaaagacATTTAATCTCAACATCCTGA
- Protein Sequence
- MDLECNLSIINYNSICRTCFSMEDLISILDDSNTNNTFSTLRIADMVMECASVKIDIDDGLPSKICSKCVIQVNQAYLFRKQCENADIRLRSILNNERHELKERVIDNELNLDYNFTSTESDNAFQKISHVDTHTEPTGQSSDNSTATNERTLASENNLIIRTLIRSSSISENYNLAQFREKLSCHLCKKILFSKANLIKHISLHKTNPRTHVDSKKTTSQKGHHCHDCGKNFRKKTLLKIHTRTHTGEKPFGCNDCDRKFSDPANLRRHKMIHTGKKPHSCHICHKAFIQGPSLTDHLRIHSGERPFECTYCEKSFSLKATLTKHLRLHTGETPFVCSFCGKSFRTSDYLRLHIRKHTAADAPTKRAAKRNGCDADRSHACSVCKRKYTSKQSLKMHSVIHGEKSFLCSECGKGFVSKASLKNHAKVHTGLKPYRCTFCAKSFSQIGALKNHNYLHTGEKPFKCKVCDKPFTQRSQVINHMRTHTGEKPYACSVCQKNFSVKASLTVHLRTHTGETPYHCPICTKGFNSSTNMTKHKKRHLISTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -