Vnig015629.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
-
Assembly
GCA_034508555.1
Location
JAVRKA010000054.1:3194726-3203761[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.00069 0.019 16.0 3.5 1 23 189 212 189 212 0.94
2 18 0.88 24 6.2 0.0 4 23 273 293 273 293 0.92
3 18 3.5 97 4.3 0.0 1 19 296 314 296 316 0.86
4 18 0.0044 0.12 13.4 2.1 1 23 337 359 337 359 0.99
5 18 6e-06 0.00017 22.4 0.4 1 23 365 387 365 387 0.98
6 18 0.41 11 7.2 0.5 2 23 395 417 394 417 0.90
7 18 0.035 0.95 10.6 0.9 1 23 425 447 425 447 0.98
8 18 0.00018 0.005 17.8 0.1 1 23 451 473 451 473 0.98
9 18 0.024 0.65 11.1 0.8 1 23 480 503 480 503 0.94
10 18 0.0001 0.0029 18.5 3.6 2 23 514 535 513 535 0.96
11 18 0.00011 0.0029 18.5 3.0 1 23 541 563 541 563 0.97
12 18 0.0007 0.019 15.9 0.1 2 21 566 585 565 587 0.90
13 18 6.1e-05 0.0017 19.3 1.8 3 23 594 614 592 614 0.95
14 18 5.9e-05 0.0016 19.3 1.0 1 23 620 642 620 642 0.97
15 18 0.0012 0.032 15.2 1.1 2 23 649 670 648 670 0.96
16 18 0.006 0.17 13.0 1.8 1 19 676 694 676 698 0.93
17 18 6.7e-07 1.8e-05 25.4 0.7 1 23 704 726 704 726 0.99
18 18 0.013 0.35 12.0 4.6 3 23 734 754 732 754 0.98

Sequence Information

Coding Sequence
ATGACTTTAGAATGCAGAATTTGTATGGAAATCGGCAACGAGGACTACATTTCAGTTTTTACAGACGTAAATATATCAAACGAAACACACGAACTGTCATTTTTACTGATGGAATGCGCCGCTGTTCACGTTTCTCAGGATGACAAACTACCTAAATCAGTATGTAAATTCTGTGTAAATCGGCTCAGACAATCCTATGAATTCAGGAAGTTATGTCAGCGatccgaaaaattattttacgccAAGTTGAATCTTACAGACCCGTTTATCAAAGACGAAAGAAATGTAGCAGacgttaaaaacaatttagaaactTCAAATTcagaatttgaaaataaagaaaaatatcgtGAATCCGatgaaattatatttgattCAATAGAAGTGTACAACGACATAAAAACAGAACAGAAAGAGGAAGATACGTTGTCGGTTGATAATTtacaaaagtattttatatcagAAAAATCCCAATATAAATGCgttttttgtctcaaaaaattTTCGAAGATACACGGAATATTGTGTAAAAACCACATTGCTCGCCATttagatttcaaaaaatatttatgcgaACACTGTAACAAAGGTTTCGCCAGTAAACATGATTTGAACAGTCATGTCACTAGGAATCATACGCCTGAACAGGACAATCGAAGAGGACGTCCTGCCAGTTTGAGGATCGATACAGAGCTATCGAATAATTCAGAATGTACGACCGATAACAAGAGCGGTACGGAAAATGCTCCTGAAATTAAAACTGAAACGAAGGATCTTGAGCAGTGTATCACCGATACCGATACTGTTTCAACGTATCCGATATGCGGAGCGTCTTTCGATACGGAAACTGAAAAGCAGAAGCATGTAAATGAAACACATTTCGTTTTTGCGTGCGGTAAGTGCGATGCGAGTTTTATGAGCGATTTCGAATTGGCTGGACACGTATCGGATTGTAGCAAAGACGACGTTGAGGCTAATTGTTTGATTGAGACTGACAGTGGCGGCTGTTACAAATGTACAATGTGTGATTTGAAGAGCCGTTATAAGTCGAAGGTCATCGCTCATACAAGAAGACATCTTGGCATTCGCAACTATATATGCAAGGTATGCGCCAAGGGGTTTATCACGAACAGTGACCTGACGAGACACGTCAAAACGCATGTCGCTATACGGAAAGAATGTGTCTGTCGGCTATGCAATGAAAGGTATCCAACTAGAACACAGTATGTGGACCACGTGCTGGCGGTTCACAAGACACAGGCCGGCGGCAAATACAAATGCGACACATGCAACAAGACTGCGCGGTCTCTAAGAGCCATGATAATACACAACAAACGTCACAGCAAAAAATACATGTGCGAAGAATGCGGAGCCGCATTTGGCATACCATATGACTTAAAGAGGCACCGATTAACACACAACAAACTTGAAGGAACATTCACTTGCGTGCCATGCGGAAGAAACTTCAAACTAAAAGCTGGCTACAGGCGACATCTCAATAGTTACCACAACACCAACAAAAAAGTACCAAGGAAATGCCAGTGTGAGGTATGCGGTCATGAATTCAAAAACTCGAGAACTTTAAACCGTCACATTTCGATCCACGGAGAAAGATACGGTCACCGTTGCAAACAATGCCGTCAGAGCTTCACGACAAAAGAACTTCTCGAGCAACACATAATTTCCCACGCGATTCAATGCGACGAGTGCGGAATGGTGTTCTACGATCGCGCCAAACTTAATAGGCACTCGGTTGAACATAGCGGTAAACGACATCTATGCACACACTGCGGGAAAGGTTTTATGACAGCCGCCAATTTGCGGATTCATGTCAGGCTCCACACTGGGGAGAAGCCCCATGTGTGTCAGTTATGCAACAAGGGTTTTCCAAGCCCAGCATCGTTACGCAACCATCGGATGAAGCATGGTGATGTGGCCCCGTTATCGTGCGACTACTGCACAGAGACCTTCAGAAACTATGGTACTTACCGCTACCATATCCTGAAGCATTCTGGGGATAGGCGGCACGAATGCAAGACGTGTAAAAAACGGTTCTACAGCAAGAACGGGCTTGTCAGACACGCCCCTGTCCACACAGGGGAACGCAATTTCAAATGCCCGGATTGTGACAAGGCCTATGGGACCAAGAATTCTTTACGAACTCACATGAAGATTCACAGTGACGTGCGACCTTTTTGGTGCTCTGAGTGCAATCGAGGGTTCAACCAGAAGCACTGCCTTGTGACGCATGCGAAGACGCACGCGCGTCGTGATCCGTGA
Protein Sequence
MTLECRICMEIGNEDYISVFTDVNISNETHELSFLLMECAAVHVSQDDKLPKSVCKFCVNRLRQSYEFRKLCQRSEKLFYAKLNLTDPFIKDERNVADVKNNLETSNSEFENKEKYRESDEIIFDSIEVYNDIKTEQKEEDTLSVDNLQKYFISEKSQYKCVFCLKKFSKIHGILCKNHIARHLDFKKYLCEHCNKGFASKHDLNSHVTRNHTPEQDNRRGRPASLRIDTELSNNSECTTDNKSGTENAPEIKTETKDLEQCITDTDTVSTYPICGASFDTETEKQKHVNETHFVFACGKCDASFMSDFELAGHVSDCSKDDVEANCLIETDSGGCYKCTMCDLKSRYKSKVIAHTRRHLGIRNYICKVCAKGFITNSDLTRHVKTHVAIRKECVCRLCNERYPTRTQYVDHVLAVHKTQAGGKYKCDTCNKTARSLRAMIIHNKRHSKKYMCEECGAAFGIPYDLKRHRLTHNKLEGTFTCVPCGRNFKLKAGYRRHLNSYHNTNKKVPRKCQCEVCGHEFKNSRTLNRHISIHGERYGHRCKQCRQSFTTKELLEQHIISHAIQCDECGMVFYDRAKLNRHSVEHSGKRHLCTHCGKGFMTAANLRIHVRLHTGEKPHVCQLCNKGFPSPASLRNHRMKHGDVAPLSCDYCTETFRNYGTYRYHILKHSGDRRHECKTCKKRFYSKNGLVRHAPVHTGERNFKCPDCDKAYGTKNSLRTHMKIHSDVRPFWCSECNRGFNQKHCLVTHAKTHARRDP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01530607;
90% Identity
-
80% Identity
-