Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000025.1:3423467-3425582[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0016 0.044 14.8 6.9 2 23 186 208 185 208 0.97

2 16 0.87 24 6.2 8.4 1 23 213 235 213 235 0.96

3 16 0.0017 0.046 14.7 0.1 2 23 244 265 243 265 0.96

4 16 0.001 0.027 15.4 6.5 1 23 271 293 271 293 0.96

5 16 0.077 2.1 9.5 1.6 2 23 300 322 299 322 0.95

6 16 0.44 12 7.1 1.2 1 19 347 365 347 369 0.87

7 16 0.012 0.32 12.1 2.8 2 23 374 396 374 396 0.93

8 16 9e-05 0.0025 18.7 2.6 2 23 402 423 401 423 0.93

9 16 1e-06 2.7e-05 24.9 1.5 1 23 429 451 429 451 0.98

10 16 3.6e-05 0.001 20.0 0.5 1 23 457 479 457 479 0.98

11 16 0.071 2 9.6 6.3 1 23 485 508 485 508 0.97

12 16 0.0014 0.038 15.0 0.3 1 23 542 564 542 564 0.94

13 16 0.00071 0.019 15.9 1.8 1 23 570 592 570 592 0.92

14 16 5e-06 0.00014 22.7 2.0 1 23 598 620 598 620 0.99

15 16 6.8e-07 1.9e-05 25.4 0.3 1 23 626 648 626 648 0.98

16 16 3.9e-08 1.1e-06 29.3 0.9 1 23 654 676 654 676 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0016	0.044	14.8	6.9	2	23	186	208	185	208	0.97
2	16	0.87	24	6.2	8.4	1	23	213	235	213	235	0.96
3	16	0.0017	0.046	14.7	0.1	2	23	244	265	243	265	0.96
4	16	0.001	0.027	15.4	6.5	1	23	271	293	271	293	0.96
5	16	0.077	2.1	9.5	1.6	2	23	300	322	299	322	0.95
6	16	0.44	12	7.1	1.2	1	19	347	365	347	369	0.87
7	16	0.012	0.32	12.1	2.8	2	23	374	396	374	396	0.93
8	16	9e-05	0.0025	18.7	2.6	2	23	402	423	401	423	0.93
9	16	1e-06	2.7e-05	24.9	1.5	1	23	429	451	429	451	0.98
10	16	3.6e-05	0.001	20.0	0.5	1	23	457	479	457	479	0.98
11	16	0.071	2	9.6	6.3	1	23	485	508	485	508	0.97
12	16	0.0014	0.038	15.0	0.3	1	23	542	564	542	564	0.94
13	16	0.00071	0.019	15.9	1.8	1	23	570	592	570	592	0.92
14	16	5e-06	0.00014	22.7	2.0	1	23	598	620	598	620	0.99
15	16	6.8e-07	1.9e-05	25.4	0.3	1	23	626	648	626	648	0.98
16	16	3.9e-08	1.1e-06	29.3	0.9	1	23	654	676	654	676	0.99

Sequence Information

Coding Sequence: ATGgattatttaaagaaaagtgCTTGTCGTACCTGTTTATCTGAAGGTGAACTCAAATCCGTCTTCGATAAAATAGTTATTGACGATAGTGGACTAGTACTTTGCGAAATGGTAACGGAGTGCACTTCCGTTAAGATTATGAAACATGATGATCTCCCAGATAAAATGTGTGATAGTTGCATAGGTAGCGTAAAACAAGCATATACTTtcaaaaaacagtgcgaaaatgttgataatattCTTCGATCACAATTAAAAGACGTTAAAAATGAATGgaattacaaagatcaaaagGAATATATTGAGTGTCCGATCATTAAATGTGAAAGTAGTGTAGATTCGTTGAATACgaattattctaaaaataaaagtagacATTTTGATGATATCTGCAAAACAGAAATTACGGAAGATTTTACGCCTGAACATTTAGGACATACGCAAAGTGAATCAGAGCTCGAAAATGAAAGTTGTATTTCGAAAACGAATAAAATTGATGCTGAAAAAGACAGTATTGATTGTCgggaaagaaaaataaaaagtcaacCGTGGAAAAAGTGTacaaaatgtaacgaaacgttcaCTAAACGTTACCATTGGCTGAAACACAGAAGAACAAAACACCGTGAAAAAGAATTCGATTGTTTGAAGTGCCATAAATGTTTCGTAAGTAAGAATAGATTTCTCAACCATGCTTGTGTTCATACGGAAAAATCAGACGGCCCTGTAGTGTGCCAAATATGCGGTCTCAAATTTGCGAAATCGGTATATTTGCGACAACATAATATGATACATACAGATGGAAAAACTCACGTCTGTCACGTTTGTAAGAAGACATTCCGGTACCTGACGTCGCTCAAAAATCACCTCAACTTTCATTCGACGGAGGCTCCTTTGATGTGCGAGCATTGTAGTAAACCTTATCGTACAGTCAAAGCGCTTCGATTTCATATTAAAAAGATTCACTCAGATTTAGAAACCGGGAAGACCGATTCCAACGAAGGAAAGAATTATTTCCACGACAGCGAACGTGATACTTTCGTTTGTAATATTTGTAGTCGGGTGTTTCCGACTATCGTCTCAATACGAGAACATTGCGTCCACCACGGGAAACGTCGGAAATGCGACAAGTGCGGGGAAATGTGTGAGAAAAAGTCggaattattaaaacataaactttTACAGCACGGCGAAAGTCAAATCCAATGCGAcgaatgtaaaaaatgtttctcgAACTATTCGTTGTTACGTAAACATAGCGTCGTTCATACGGGCGAGACTCCGTTTACTTGCGAGAACTGCGGATTGAAGTTTAGGTACTCCGGTAACTTGCAACGACACATGAAACTGCACCGGGGCGAACGGCCTCACGTTTGTCACATATGCAATAAAGCGTTCGTCCAAGGTCCTTCGTTAGCGAATCATATTCGAGTTCATACGAAAGAAAAACCGTTCCAGTGTAAATATTGCGAGAAATGTTACAGCGCCGCTTGCACGCTTTATGAACATGAGCGCCGCAAACATTTAGGGATCGAAACTGTTCGAAAACCGCACCAGTCCAACCGTCGAGTCACACCAATTGCCGCGggacttaaaataaaaaacgagaaGGTCAAAGGTGAATTTTTGTGTAGTGAATGCGGGAAAAAATATACAACTAAAGCTGGATTAGATTTGCATAGTAATATTCATATAGGGGTTAAGCCGTATCATTGCGCGACTTGCGGGAAGTCGTTTTCGCAGATATCAGGCCTTAAGTCTCACAGTTATTTGCATACGGGGGAGAGACCTTTCAAGTGTACGCTTTGCGGAAGGGGCTTCACGCAAAGCCAACACGTCGTAGTCCATATGCGAACCCATACCGGGGAAAGACCGTTCGAATGTAATTTATGCGGGAAAAGCTTCGCCTTAAGGAAAAACTTAACCGTCCATATCAGGATTCATACGGGCGAAACGCCATATCAGTGTCCGATATGCGGGAAAGGGTTCAAAAGTTCAAATAACATGAAAAAACATCAGAGAATTCATGTGGACAAACAGAAATAa
Protein Sequence: MDYLKKSACRTCLSEGELKSVFDKIVIDDSGLVLCEMVTECTSVKIMKHDDLPDKMCDSCIGSVKQAYTFKKQCENVDNILRSQLKDVKNEWNYKDQKEYIECPIIKCESSVDSLNTNYSKNKSRHFDDICKTEITEDFTPEHLGHTQSESELENESCISKTNKIDAEKDSIDCRERKIKSQPWKKCTKCNETFTKRYHWLKHRRTKHREKEFDCLKCHKCFVSKNRFLNHACVHTEKSDGPVVCQICGLKFAKSVYLRQHNMIHTDGKTHVCHVCKKTFRYLTSLKNHLNFHSTEAPLMCEHCSKPYRTVKALRFHIKKIHSDLETGKTDSNEGKNYFHDSERDTFVCNICSRVFPTIVSIREHCVHHGKRRKCDKCGEMCEKKSELLKHKLLQHGESQIQCDECKKCFSNYSLLRKHSVVHTGETPFTCENCGLKFRYSGNLQRHMKLHRGERPHVCHICNKAFVQGPSLANHIRVHTKEKPFQCKYCEKCYSAACTLYEHERRKHLGIETVRKPHQSNRRVTPIAAGLKIKNEKVKGEFLCSECGKKYTTKAGLDLHSNIHIGVKPYHCATCGKSFSQISGLKSHSYLHTGERPFKCTLCGRGFTQSQHVVVHMRTHTGERPFECNLCGKSFALRKNLTVHIRIHTGETPYQCPICGKGFKSSNNMKKHQRIHVDKQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01530677;
90% Identity: -
80% Identity: -