Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000039.1:1223907-1225855[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00087 0.024 15.6 2.0 1 23 189 211 189 211 0.99

2 14 3.6e-05 0.00099 20.0 0.6 1 23 217 239 217 239 0.98

3 14 5.7e-05 0.0016 19.4 1.9 1 23 245 268 245 268 0.96

4 14 0.22 6.2 8.0 4.4 1 23 296 318 296 318 0.98

5 14 4.9e-07 1.4e-05 25.9 0.7 1 23 324 346 324 346 0.97

6 14 7.1e-05 0.0019 19.1 2.1 1 23 352 375 352 375 0.97

7 14 0.0073 0.2 12.7 0.8 1 23 405 427 405 427 0.98

8 14 0.00035 0.0096 16.9 0.8 1 23 433 456 433 456 0.92

9 14 0.0036 0.1 13.7 5.6 1 23 463 485 463 485 0.98

10 14 4e-06 0.00011 23.0 4.9 1 23 491 513 491 513 0.99

11 14 5e-05 0.0014 19.5 0.4 1 23 519 541 519 541 0.97

12 14 1.6e-05 0.00044 21.1 4.8 1 23 547 569 547 569 0.98

13 14 3.9e-06 0.00011 23.0 0.1 1 23 575 597 575 597 0.97

14 14 8.9e-06 0.00025 21.9 1.8 1 23 603 625 603 625 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00087	0.024	15.6	2.0	1	23	189	211	189	211	0.99
2	14	3.6e-05	0.00099	20.0	0.6	1	23	217	239	217	239	0.98
3	14	5.7e-05	0.0016	19.4	1.9	1	23	245	268	245	268	0.96
4	14	0.22	6.2	8.0	4.4	1	23	296	318	296	318	0.98
5	14	4.9e-07	1.4e-05	25.9	0.7	1	23	324	346	324	346	0.97
6	14	7.1e-05	0.0019	19.1	2.1	1	23	352	375	352	375	0.97
7	14	0.0073	0.2	12.7	0.8	1	23	405	427	405	427	0.98
8	14	0.00035	0.0096	16.9	0.8	1	23	433	456	433	456	0.92
9	14	0.0036	0.1	13.7	5.6	1	23	463	485	463	485	0.98
10	14	4e-06	0.00011	23.0	4.9	1	23	491	513	491	513	0.99
11	14	5e-05	0.0014	19.5	0.4	1	23	519	541	519	541	0.97
12	14	1.6e-05	0.00044	21.1	4.8	1	23	547	569	547	569	0.98
13	14	3.9e-06	0.00011	23.0	0.1	1	23	575	597	575	597	0.97
14	14	8.9e-06	0.00025	21.9	1.8	1	23	603	625	603	625	0.98

Sequence Information

Coding Sequence: ATGGATGGAACTAGTATAAATGTACTAAACTTAGAAACAATTTGCCGAACATGTCTTGAAAAAAATGGTACGACGTCAATTTTCGGAGAAAATAACTTAATTCAGTCGAAGCTTTCTCTCATTTGTAATATTCAGGTAAATAAATACGACGGCTGTCCTCAATCGCTGTGTTGCGATTGTACTCAAAAAATCAACGATGCATTCTTATTTCGAGAAAAATGTGAGAAGTCTGAACAGTTTCTAGAagcttataaaaacaaatatgaacAGGCAGTAGAAATAAAAACTGAGGATAATTCAAATGACAGGGAATTAACCAATCCAGTCGCAGTATTAGAATTAATAAACAACGGCAATTGTAGTGAGACCGATTGCCTTTCTAAAAATGAGAGCGATATTTTTGAAGACGATAATACGCTTACTAAAGAGATAAAGGAAGATCAGTTTGAAGATACTAAGAAACCGATACAGAAACCTGAAAGGAAAGTTAGGccatataatttcaaaaacgtaaacaaaaaagcTATTAATGTAGAAACGATTAATGAAAAcggtgaaaaaatatatcagtgttatttttgtaaaactatTTACGAAACTCAAAAAGAACTAATTGAACATTATAGAACGCATAACAGTGAAAAACCGTTCGTCTGCCCTCAGTGCGGTCACGGATTCAAACGTCCTTTTATGTTAACCGATCATCTCTCGATTCATTTAGGCATTAAACCCTTCGAATGCGATCACTGTACTAAAAGTTACGCGTCAAAGTATTCGTTGTCTAAGCACGTGTTAAGCGCCCACAAAGAacacaaaaaagagaaaaaagaaattataaaaatagaaccCGAACTCGAAACTGTCACGAAAAACGGcgacaaaatatttcaatgttttttctGCAAGACCGTTCATAAAACGCAAGATGAGCTAATCAAACATTACAAAGAGCACGACCAAGAAAGACCATACGTTTGCTCGATATGCGGTAAGCAGTACAGTCGACCTTCGCATTTAAATGCTCATTTGTTACaacatcaaaaaattaaaccccATCGATGTGAACTCTGCGGAAATTCATATTCGGATCGATATTCATTACTGAAACATTTGCGTAAAATACACGGTAAAAATAAAGAGGAATTGAACATCGATCGATGGAATAACGATATCGTTCATATTGAGACAACACAGGAAAACGGAGAGAAAATTTACGTATGTTATATATGTAAGAACGAATATGAAAATCAACAACAGCTTTTAGAGCATTACCAGACGCATGATCCGACACGTCCGTACATATGTCCTCAGTGCGGTCAACGATTCAAACGACCGCACGTTTTAAACGATCACGTGTTATTTAATCATTTGGGCGTTAAGAAACCATTCGAATGCGACGTTTGTCACAAAGAATATTCGTGCAAAACTAATTTAACGGTTCACTATCGGACACATACCGGAGACTACCCGTACAAATGCGAGGATTGcaataagaaatttaaacaTTCGACCGAATTGAAAATGCATCGTAGAGTGCATACGAAAGAAAAACCGTTTATGTGTCCGTACTGTGGAAAAATGATGTCGATGTCATCGCATTTGGCAGTACATATCCGAGCTCATACCGATGAACGGAGACACAAGTGTACCCTTTGCGACAAAGCTTTCGTGCGGAGTGAGTGTTTAAAAACTCATATGTTAACTCATACCGGAGTACGAAATTATCCGTGTAAAGTTTGCGGTAAGGCGTTTTATAGACCGAGTGCTTTGAAACTCCATTCGATGATTCATACCGATGAAAGACCGCACGTTTGCAAGTATTGTGGCAAGGGTTTCATTCAAAGACAAGCAATGAATACTCATATGAACACacacatttaa
Protein Sequence: MDGTSINVLNLETICRTCLEKNGTTSIFGENNLIQSKLSLICNIQVNKYDGCPQSLCCDCTQKINDAFLFREKCEKSEQFLEAYKNKYEQAVEIKTEDNSNDRELTNPVAVLELINNGNCSETDCLSKNESDIFEDDNTLTKEIKEDQFEDTKKPIQKPERKVRPYNFKNVNKKAINVETINENGEKIYQCYFCKTIYETQKELIEHYRTHNSEKPFVCPQCGHGFKRPFMLTDHLSIHLGIKPFECDHCTKSYASKYSLSKHVLSAHKEHKKEKKEIIKIEPELETVTKNGDKIFQCFFCKTVHKTQDELIKHYKEHDQERPYVCSICGKQYSRPSHLNAHLLQHQKIKPHRCELCGNSYSDRYSLLKHLRKIHGKNKEELNIDRWNNDIVHIETTQENGEKIYVCYICKNEYENQQQLLEHYQTHDPTRPYICPQCGQRFKRPHVLNDHVLFNHLGVKKPFECDVCHKEYSCKTNLTVHYRTHTGDYPYKCEDCNKKFKHSTELKMHRRVHTKEKPFMCPYCGKMMSMSSHLAVHIRAHTDERRHKCTLCDKAFVRSECLKTHMLTHTGVRNYPCKVCGKAFYRPSALKLHSMIHTDERPHVCKYCGKGFIQRQAMNTHMNTHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -