Vnig010234.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000025.1:1718034-1720484[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.011 0.3 12.2 1.9 2 23 237 259 236 259 0.94 2 18 1.4e-05 0.00038 21.3 1.4 2 23 265 286 264 286 0.97 3 18 0.019 0.53 11.4 9.1 1 23 293 315 293 315 0.96 4 18 0.001 0.029 15.4 1.8 1 23 324 346 324 346 0.96 5 18 0.028 0.77 10.9 6.4 1 23 352 374 352 374 0.95 6 18 0.00013 0.0035 18.3 0.9 1 23 380 403 380 403 0.97 7 18 0.8 22 6.3 0.9 1 12 429 440 429 442 0.92 8 18 0.0067 0.18 12.8 3.7 2 23 456 478 455 478 0.93 9 18 1.3 36 5.6 0.5 1 23 483 505 483 505 0.90 10 18 1.2e-06 3.3e-05 24.6 0.9 1 23 511 533 511 533 0.98 11 18 0.00096 0.026 15.5 0.4 1 23 539 562 539 562 0.97 12 18 0.0041 0.11 13.5 2.0 2 23 570 592 569 592 0.93 13 18 0.00044 0.012 16.6 5.0 3 21 611 629 610 632 0.95 14 18 0.00041 0.011 16.7 0.5 1 23 638 660 638 660 0.98 15 18 0.00021 0.0059 17.6 3.0 1 23 666 688 666 688 0.98 16 18 1.2e-06 3.4e-05 24.6 1.9 1 23 694 716 694 716 0.99 17 18 7.2e-05 0.002 19.0 1.3 1 23 722 744 722 744 0.98 18 18 0.00024 0.0065 17.4 4.0 1 23 750 772 750 772 0.98
Sequence Information
- Coding Sequence
- atggatttttcaaaaaataaaatttgtcgaTCGTGCCTGTCAGAAGATGAATTGGAGTCAGTTTTTGGAGTTACCACATTTGAACATAATGAGTTATTATTTTCGGAAATGCTAATGGAGTGTACTACTGTAAAgATTAAAGAAAATGACATTTTACCTCATAAAATCTGTCAAACATGTATAGAGCATCTGAAGCAAACATACGCATTCAAGAAGCAATGCGAAACTGTAGACACTGTTCTTCGTCTCCACATTGAAATGCAAGAAAACAGAGAAGATAAGCTGGAAAGAGTTAAATCGGAATCTTTATTTTACTTTTCTGgcattgaaaatgaaaaaatcgcAACTCCAGTTATAATCGAATCACAAAGTGTTTCACAAAACGAAAGCGATAAAAATTTCACACTAGAAGAAAACAGTGACTACACCCCTATGGAATTGTCATCGACTTTTTGTATCGCACCGGACGTTGTCAAAGAAGAAAACGCTcaaacaaatttagaaaacgTGAATGAAAAACCAATTAATTCAGCTGTGGAACTAGAAATGCTTAacgaaaatatagaaatatggGATATAAATGAAACGACTGAAGCGTTAGAATTGCAAGAACTTTCAAACGGCAATGACACTCAGATTATTTTGGTTGAAGAAAGTGATCACAGTGACCTGTCGAAACTTAACAGAAATAAAGTAACCGTTTGGAAATCTTGTGTAAAATGCGACATCACTTTTAATACTCGATATTTGTATGTAAAACATTTAATGCATGTCCACGGCGAGGCTAGAAGTCCTTGTAAAGTGTGTGGAAAAAGTTTCCAAAAACAAAGCGCGCTTCGAAatcattttaaaacacatttgcaCTCTCAATATTTTCACAGTTGTCGGACATGCGGACATAAATTTACGAGACTGAGCGATTTATGCAAACATAAATCGATGCATTGCGGCGCAAAAAACGAAGGTCATTTTCCGTGTAAAATTTGCGGACGAACGTTTACGAAACTGATTCGATTACGTCATCATAATTTGATCCATACAGATGAAAAACCTCACGCTTGTCATTTTTGCGGTAAGAAATTCCGATTACGAAACACTTTAAAATATCATTACACCGTGCATTTGAAGGAGGCACAGTTTGTTTGTGAATATTGCAGTAAGCCATACCGGACGAAAAAATCCGTTATGGCGCATATTAAGCGCATGCACCCGCAACccgaacaaaaacaaaacgaccGTTCGCATTTgggcaataatttttattacgaCGACGAACACAATTTATATGTGTGTTGTATCTGCGGAAGAGGTTTTTCCAGTGAAATAATTGTAAAAGAACATTGCGTTCGACACAGAATACAGAAAAAATGCGACAAATGCGAggaatttttcaataataagtcTGAATTAGTAAAACATAAACATTTGCAGCACGGCGATACAATTTACAACTGTTTTCAATGCGATAAGATTTTCTTATCGAACGCGATTCTTAAAAAACATAGCATCGTCCATTCTGGCGAGAAATTGTTTTCTTGCGAAAAGTGTGGCTTACGATTTGCGTATAGAGGTAATTTGAATCGGCATATTAAAACGCACAACGGTTTGAAACCGTACAAATGTCACGtttgtttgaaatcgtttaCTCAAGGGCCGGCGCTAGCCGAGCACATCGAAAGAATGCACGCGGAACGAAAAACTCCATTGAATTGTCAATACTGTGATAAAATATACTATACGGCCGGTTCGTTGAAGTCACACCATTATAGCAAACATATgaacaaaatgtcaaaaacaaaATCGGACAAATTACAGCCGGACGAAACGTTGTGTAACATTTGCGgtaaaagtttttcaaacaaaaacagtCTGAAACAACATCACAAGTGTATCCACGGTGACAAAAAACGTTATGAATGTACAGTTTGTGGGAACGGTTACGCAACAAAAGCTCACTTGGGACGACATACCAATATGCATAATGGAATAAAACCGTACGCGTGTTCGATTTGTAAACGAAGGTTCTCTCAGCTCGGCAACATGAAAACACATCATTTAACTCACACCGGGGTCAAACCGTTTAAGTGCGAAATTTGCGAGAGGCGCTTCACTCAACGTCAACAACTCATGTCGCACATCAGAACTCATACTGGGGAGAAGCCCTATTCGTGCACGGTTTGCGGAAGAAATTTTGCTCACAAATTAAATCTAGATGTCCATTATAGAATTCATACTGGCGAAACACCATATCACTGTGCGTTTTGTGAAAAAGGATTTAAAAGTTCCAATAATATGAAGAAACATCAGAGAGTGCatttaaacaaatga
- Protein Sequence
- MDFSKNKICRSCLSEDELESVFGVTTFEHNELLFSEMLMECTTVKIKENDILPHKICQTCIEHLKQTYAFKKQCETVDTVLRLHIEMQENREDKLERVKSESLFYFSGIENEKIATPVIIESQSVSQNESDKNFTLEENSDYTPMELSSTFCIAPDVVKEENAQTNLENVNEKPINSAVELEMLNENIEIWDINETTEALELQELSNGNDTQIILVEESDHSDLSKLNRNKVTVWKSCVKCDITFNTRYLYVKHLMHVHGEARSPCKVCGKSFQKQSALRNHFKTHLHSQYFHSCRTCGHKFTRLSDLCKHKSMHCGAKNEGHFPCKICGRTFTKLIRLRHHNLIHTDEKPHACHFCGKKFRLRNTLKYHYTVHLKEAQFVCEYCSKPYRTKKSVMAHIKRMHPQPEQKQNDRSHLGNNFYYDDEHNLYVCCICGRGFSSEIIVKEHCVRHRIQKKCDKCEEFFNNKSELVKHKHLQHGDTIYNCFQCDKIFLSNAILKKHSIVHSGEKLFSCEKCGLRFAYRGNLNRHIKTHNGLKPYKCHVCLKSFTQGPALAEHIERMHAERKTPLNCQYCDKIYYTAGSLKSHHYSKHMNKMSKTKSDKLQPDETLCNICGKSFSNKNSLKQHHKCIHGDKKRYECTVCGNGYATKAHLGRHTNMHNGIKPYACSICKRRFSQLGNMKTHHLTHTGVKPFKCEICERRFTQRQQLMSHIRTHTGEKPYSCTVCGRNFAHKLNLDVHYRIHTGETPYHCAFCEKGFKSSNNMKKHQRVHLNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01530580;
- 90% Identity
- -
- 80% Identity
- -