Vnig000917.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
-
Assembly
GCA_034508555.1
Location
JAVRKA010000002.1:4630567-4633244[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.0042 0.12 13.5 1.0 2 23 113 135 112 135 0.96
2 19 0.1 2.8 9.1 0.3 2 23 142 163 141 163 0.94
3 19 0.0071 0.19 12.8 0.4 2 23 173 194 172 194 0.97
4 19 0.0011 0.031 15.3 1.1 1 23 198 221 198 221 0.96
5 19 0.015 0.42 11.7 0.2 1 23 226 248 226 248 0.92
6 19 7e-07 1.9e-05 25.4 1.5 1 23 257 279 257 279 0.99
7 19 0.00038 0.01 16.8 1.5 3 23 285 305 284 305 0.97
8 19 0.00053 0.015 16.3 3.4 1 23 311 333 311 333 0.98
9 19 1.7e-06 4.6e-05 24.2 1.0 1 23 339 361 339 361 0.98
10 19 1.5 42 5.4 0.4 1 13 367 379 367 381 0.90
11 19 0.0028 0.077 14.0 0.9 2 23 460 482 459 482 0.96
12 19 0.0037 0.1 13.6 1.7 2 23 520 541 519 541 0.96
13 19 0.00044 0.012 16.6 2.0 1 23 545 568 545 568 0.96
14 19 0.0094 0.26 12.4 0.5 1 23 573 595 573 595 0.96
15 19 9.9e-06 0.00027 21.8 2.9 1 23 604 626 604 626 0.99
16 19 0.008 0.22 12.6 0.1 1 23 630 652 630 652 0.98
17 19 0.00079 0.022 15.8 0.3 1 23 658 680 658 680 0.87
18 19 5.1e-07 1.4e-05 25.8 0.3 1 23 686 708 686 708 0.99
19 19 0.039 1.1 10.4 3.9 1 23 714 737 714 737 0.97

Sequence Information

Coding Sequence
ATGATTAAACTTGAAGACACAGAAACATCGTATGAAGATCTTTCTCAAGAAATGAATATCGATTTATTCAACGAAAGGCAAACGTACCAAGAATGGCCTACAGTTGTCGATAAAAAACTCGATGAAAAAGAATCAGTCAAATCAGAAAATAAGTCACAAGACACAAATATTTGTTACGTTAACGATGAGTCTTTTGGGAGAAATTGCTCTACGGAAACtgataaatattatgttaaacggGCTGACGGAGTCCACTGTAAGTTATGTTCGGCAGTTCGTAAAAGTGTCGCTACCTGGAAAATACACTTTTCGGTACACATATCTGAGAAAAGAGTAATGTgtgatatttgttataaaccGTTTAAGAATACGTGGCAAATGAAAACACATAAAAAACGCGTACATTCCAACGACAACACTATCAAATGCGACATTTGCGGTATTAAAGTTCGCAGTTACAATTTACTATATCATAAAAAGAACATTCACGAAAAAGTTGGCAAAACTCCTCAGATAGAATGCGACTTGTGCGGCAACAAATACTTTACTGAACAAGGGTTGAAAATACACCAAAGAAAACATTTGAATCCATTCAGTTGTGAccagtgtaaaaaaaatctgacaacaAAACAGTCTTTAGAATTACATATCAAAAATGTTCACGAAGGAAGAAAATACTATTGTGATATTTGCGGTAAAATGTTTAATTGGGAGGGCGGGATGTTGATCCATCGAAAAAAACACGACTCCAATTTTAAACAGCCTACTTTCACATGCAATGAATGTGGAAGGATATTCAACACAAGATCCAATTACAGAGTCCATTTACAGACTCATGAAGGCGGACGTCCTTGCGAAATTTGTGGTACGGTGTTGAAAAACACAAATTGCTTGAAAAGACATATGTTGACTCATACTGGTGTAAAAGCTTACGATTGTGAACATTGTGATAAAAAGTTTGCGTGTAGGTCGGCTCTTGTGGTCCATCAAAGAACGCACACTGGAGAGAAGCCCTACGAGTGcagtatttgtaaaaaaagatttaCACAGCGAACTTCTCTCGTAATTCATATGCGAGGACATACGGGCGAACGTCCTTATAGCTGTAATCGCTGTACAGAATCGTTTGCCAGCAAAACTCTGGATGTAGTAAATATTAAAGAAGAAACGGAAGATTATATACAAGGTAGCGGCGAAGCATTTGCTGAATATTTTAATTCGTTAAATCGACAAAAGTCTTGGCGAGATTGGCCTGACGAAACTGAAGGATACGTTAAACGCGCCGACGGTGTACATTGTAAATTATGTCCAGCCGTCCGTAAAACAattcatttttggaaaaagcatTATTCGATACACGTGTCCGAAAAAACTATCGTTTGTGACCTTTGTaataaaacgtttaaaaatatactgcaAATGAAAAATCACAGGCAGCGGATTCATTTAGATAAAAAGATTGTTGAGTGTGAATTATGCCACGTCAAATTATCTAATATGTATCTGAAagtgcataaaaaaaatatgcatgagAAAAAGGGTCGAATGCCCAGATGTGAATGTGATATATGCGGAAATAAGTATTCGACTGAAATAACACTGAAGGTTCATCGTCAGAAGCATTTCAATCCCTTTAACTGCAACTTGTGTGATAAGAAATTGACAACAAAACACGGCTTAGAATTGCATATCAGAAATATGCACGAGGgcagaaaatattattgcgaaatctgcaataaaatttttaattgggAGAGTAGCCTATTATTGCATAGAAAAGATCACGATCCGAACTTTAAAAAGCCCGAATATAAATGTGACGACTGCGGTAAAATATTTCAcgtaaaatcaaattataaactTCATCTTCAAACTCATCAGAGCGGTTTTCCTTGCGAAACTTGTGGCTTGTTATTGAAAACAACTGAAGGTCTGAGACGACATTTGATTACTCACACGGGCACTAAAGCGTATACGTGCAAATATTGCGGCAAAAGTTTCGCGAGCAGTTCGATTCTTGGCCCGCACCTTCGAATACATACTGGGGAGAAACCGTACGAGTGTAATGTTTGTGGTAAACGGTTCAATCAGCGAAGTCCTCTCGTCATTCATATGAGAAGTCACACCGGGGAACGTCCTTATAAATGCACGCATTGCACAGATGCGTTTACAAATAAAACCCTATTGGATACGCACAAgcaaaaattgcatttaattgttaaacagtAG
Protein Sequence
MIKLEDTETSYEDLSQEMNIDLFNERQTYQEWPTVVDKKLDEKESVKSENKSQDTNICYVNDESFGRNCSTETDKYYVKRADGVHCKLCSAVRKSVATWKIHFSVHISEKRVMCDICYKPFKNTWQMKTHKKRVHSNDNTIKCDICGIKVRSYNLLYHKKNIHEKVGKTPQIECDLCGNKYFTEQGLKIHQRKHLNPFSCDQCKKNLTTKQSLELHIKNVHEGRKYYCDICGKMFNWEGGMLIHRKKHDSNFKQPTFTCNECGRIFNTRSNYRVHLQTHEGGRPCEICGTVLKNTNCLKRHMLTHTGVKAYDCEHCDKKFACRSALVVHQRTHTGEKPYECSICKKRFTQRTSLVIHMRGHTGERPYSCNRCTESFASKTLDVVNIKEETEDYIQGSGEAFAEYFNSLNRQKSWRDWPDETEGYVKRADGVHCKLCPAVRKTIHFWKKHYSIHVSEKTIVCDLCNKTFKNILQMKNHRQRIHLDKKIVECELCHVKLSNMYLKVHKKNMHEKKGRMPRCECDICGNKYSTEITLKVHRQKHFNPFNCNLCDKKLTTKHGLELHIRNMHEGRKYYCEICNKIFNWESSLLLHRKDHDPNFKKPEYKCDDCGKIFHVKSNYKLHLQTHQSGFPCETCGLLLKTTEGLRRHLITHTGTKAYTCKYCGKSFASSSILGPHLRIHTGEKPYECNVCGKRFNQRSPLVIHMRSHTGERPYKCTHCTDAFTNKTLLDTHKQKLHLIVKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01530707;
90% Identity
-
80% Identity
-