Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000041.1:760013-761506[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 6.4e-06 0.00018 22.4 2.9 1 23 59 81 59 81 0.98

2 14 0.00023 0.0064 17.4 5.6 1 23 87 109 87 109 0.99

3 14 0.00025 0.0069 17.3 4.5 1 23 115 137 115 137 0.97

4 14 1e-06 2.8e-05 24.9 0.6 1 23 143 165 143 165 0.98

5 14 5.7e-06 0.00016 22.5 3.6 1 23 171 193 171 193 0.99

6 14 3.7e-05 0.001 19.9 1.0 1 19 199 217 199 219 0.97

7 14 6.2e-05 0.0017 19.2 3.4 1 23 275 297 275 297 0.99

8 14 0.043 1.2 10.3 4.0 1 23 302 323 302 323 0.97

9 14 0.011 0.31 12.1 3.2 1 23 329 351 329 351 0.98

10 14 1e-06 2.8e-05 24.9 0.9 1 23 357 379 357 379 0.99

11 14 0.00011 0.0031 18.4 2.0 1 23 385 407 385 407 0.98

12 14 4.9e-05 0.0014 19.6 0.6 1 23 413 435 413 435 0.98

13 14 2.5e-05 0.00068 20.5 2.9 1 23 441 463 441 463 0.98

14 14 9.1e-06 0.00025 21.9 0.7 1 23 469 491 469 491 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	6.4e-06	0.00018	22.4	2.9	1	23	59	81	59	81	0.98
2	14	0.00023	0.0064	17.4	5.6	1	23	87	109	87	109	0.99
3	14	0.00025	0.0069	17.3	4.5	1	23	115	137	115	137	0.97
4	14	1e-06	2.8e-05	24.9	0.6	1	23	143	165	143	165	0.98
5	14	5.7e-06	0.00016	22.5	3.6	1	23	171	193	171	193	0.99
6	14	3.7e-05	0.001	19.9	1.0	1	19	199	217	199	219	0.97
7	14	6.2e-05	0.0017	19.2	3.4	1	23	275	297	275	297	0.99
8	14	0.043	1.2	10.3	4.0	1	23	302	323	302	323	0.97
9	14	0.011	0.31	12.1	3.2	1	23	329	351	329	351	0.98
10	14	1e-06	2.8e-05	24.9	0.9	1	23	357	379	357	379	0.99
11	14	0.00011	0.0031	18.4	2.0	1	23	385	407	385	407	0.98
12	14	4.9e-05	0.0014	19.6	0.6	1	23	413	435	413	435	0.98
13	14	2.5e-05	0.00068	20.5	2.9	1	23	441	463	441	463	0.98
14	14	9.1e-06	0.00025	21.9	0.7	1	23	469	491	469	491	0.98

Sequence Information

Coding Sequence: ATGGAATCGAATTTAATGAAGGACGTTGAAAAAGGGAACTTAAGCTGCAACATCAACAGCGGCACGTTTGAGAATACAAAATCAAAAACAGATTTGCAACAAAAAAGTGACTTATTTGAAGAAAACGAAGAAGTTGGTCACCATAAAGAGTCTTCCAAATCGAAAGGCAGACTTTACAAATGCAAAATGtgtaaaaagaattttaaatatccCTCATTACTAAACAGACATAAGTTGGTTCATAGTGATAAGAAACCATTTCAGTGCAGCGcttgtaaaaaatgctttactaatctttataaattaaatattcataagCGTACACATAGTGGTGAAAAGTGTCATTATTGCGATGTTTGCAAAAAGCGCTTTCCTCACTTGAGTACATTGGAATCGCATAAACGTGTCCATACTGGTGATAGACCTTATCAATGCGATGTGTGTGGAAAAGGGTTTTCTCAAACTGGCTCGTTGAACAATCATCGGCGCCAACATACCGGCGATAAACCGTTTCAGTGTAAAGTGTGCAACAAGAGTTTCTTTCACATCAGCAATTTGAACGTTCATCGAAGAATACATACAAacgagaaaccataccagtgcaAAATCTGCGAGAAACGATTTACGCATTTGAGTACGTTAAAATCGCACGCAGGTGAAAAACTGTATCGTTGCGATGTTTGCTGTCAAGATTTCGCGCAATTGAATTGTTTACGAATGCATGATTGCTCTTTAATTGATAACTGTACAACAGGAGATGTACAGAGATGCAATGAAACGAATTTCTGTGTTCTCGAAAATACGTCGAACGGTGAGAAAATGTATCAGTGTAAAATTTGCCAATCGACTTTCAAAGAAGCTAGTGATTTATGCAGGCATAAACGTATACATACTGTAGATAAACATCAATGCGTTgcttgtaaaaaaagttttacgcAAAAATATTTGGATCGACATAAACGCGTCCATACCGGCGAAACTGCTTACAAATGTGAATTGTGTAAAAAGGAATTTGTACTTTTTGCTACTCTAAAGTCGCATAAATGCGTACATGCAGGAAATAAACCATTCCAGTGtgaaatttgcgagaaaaaaTTCATTCGCAACAGCGAACTTACAGATCATAAACGTATTCATTCAGGAGAGAAACCGTTTAAATGCGATGCTTGCGACAAACGGTTCACTAAACTCAATTATTTGAGAGTACATAAACGAGTTCATACAGGCGAGAAACCTTATGAATGTGACGTATGTAAAAAAACGTTTAGTCAACTTGGCAGTTTGAGTGGTCACAAACGACTACATtctggtgagaagccgtatcgGTGCAATGTTTGCGATAGAAATTTCACACATCTCAGTGGACTAAACAGTCACAAACGACTGCATTCGGGAGAAAAACCATTTCAGTGTGACGTATGTGgtaaaaatttcacaaacgTTAATGGACTAAAGACTCACACAAGATTACATACAGCAGACAGAAATTCGtaa
Protein Sequence: MESNLMKDVEKGNLSCNINSGTFENTKSKTDLQQKSDLFEENEEVGHHKESSKSKGRLYKCKMCKKNFKYPSLLNRHKLVHSDKKPFQCSACKKCFTNLYKLNIHKRTHSGEKCHYCDVCKKRFPHLSTLESHKRVHTGDRPYQCDVCGKGFSQTGSLNNHRRQHTGDKPFQCKVCNKSFFHISNLNVHRRIHTNEKPYQCKICEKRFTHLSTLKSHAGEKLYRCDVCCQDFAQLNCLRMHDCSLIDNCTTGDVQRCNETNFCVLENTSNGEKMYQCKICQSTFKEASDLCRHKRIHTVDKHQCVACKKSFTQKYLDRHKRVHTGETAYKCELCKKEFVLFATLKSHKCVHAGNKPFQCEICEKKFIRNSELTDHKRIHSGEKPFKCDACDKRFTKLNYLRVHKRVHTGEKPYECDVCKKTFSQLGSLSGHKRLHSGEKPYRCNVCDRNFTHLSGLNSHKRLHSGEKPFQCDVCGKNFTNVNGLKTHTRLHTADRNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01530645;
90% Identity: -
80% Identity: -