Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000046.1:495737-499569[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00015 0.0042 18.0 0.4 1 23 222 244 222 244 0.98

2 12 7.7e-05 0.0021 19.0 3.7 1 23 248 270 248 270 0.98

3 12 5.4e-06 0.00015 22.6 0.2 1 23 276 298 276 298 0.98

4 12 8.3e-06 0.00023 22.0 3.2 3 23 306 326 304 326 0.96

5 12 0.00012 0.0034 18.3 0.1 2 23 333 354 332 354 0.96

6 12 3.6e-05 0.001 20.0 1.8 1 23 360 382 360 382 0.99

7 12 2.5e-07 6.9e-06 26.8 0.4 1 23 388 410 388 410 0.99

8 12 0.00012 0.0034 18.3 0.8 1 23 416 438 416 438 0.98

9 12 2.6e-05 0.00072 20.4 0.0 1 23 444 466 444 466 0.98

10 12 3.2e-05 0.00089 20.1 1.6 1 23 472 494 472 494 0.98

11 12 0.00026 0.0071 17.3 4.7 1 23 500 522 500 522 0.98

12 12 1.8e-05 0.00051 20.9 1.3 1 23 528 550 528 550 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00015	0.0042	18.0	0.4	1	23	222	244	222	244	0.98
2	12	7.7e-05	0.0021	19.0	3.7	1	23	248	270	248	270	0.98
3	12	5.4e-06	0.00015	22.6	0.2	1	23	276	298	276	298	0.98
4	12	8.3e-06	0.00023	22.0	3.2	3	23	306	326	304	326	0.96
5	12	0.00012	0.0034	18.3	0.1	2	23	333	354	332	354	0.96
6	12	3.6e-05	0.001	20.0	1.8	1	23	360	382	360	382	0.99
7	12	2.5e-07	6.9e-06	26.8	0.4	1	23	388	410	388	410	0.99
8	12	0.00012	0.0034	18.3	0.8	1	23	416	438	416	438	0.98
9	12	2.6e-05	0.00072	20.4	0.0	1	23	444	466	444	466	0.98
10	12	3.2e-05	0.00089	20.1	1.6	1	23	472	494	472	494	0.98
11	12	0.00026	0.0071	17.3	4.7	1	23	500	522	500	522	0.98
12	12	1.8e-05	0.00051	20.9	1.3	1	23	528	550	528	550	0.98

Sequence Information

Coding Sequence: atggaagaaacattaattttatcaaacgATTTGAATCGCGTATGTAGGACATgtttatctgaaaaaaatttagacGAATTACAATCAGTTTTTGACGAACGGGTAAATGATATGGTAATGGAACTGGCCTCCGTTAAGATCTTACAAAATGACGGTCTGCCCGGCGTGATATGCGTTCAGTGTGTGCTTCAAGTAGGCCTTGCTTATTCCTTTAAACAGCAATGCGAACGCTCTGACTTGAAGCTTCGGAATATTCTATTTCCGTTAGAACAGCAAGCGACGGACgaagatatttatttacagtccGGTTATAGTGACACCGTACCACAAATAGTCGAAGAAAATGTTTTAGAAAACGCTACTATCGAAGTTAAATACGATAACACGAtagtaaaatacaataattcaattGTTAAATACGATAACACGATagaaataagcaattttgttaaaatagaaACAGTTGACGTTTCTATACAAGTAGGGaaatcgTTCATAACAAAGCAGAGGCCTAAAAGGTCTACGAATACAGATTTTTTCAATAGTTTAATAAGAGATGAACAGATGGCTATCGATATCGATATTAATGAAGACAGACTGGAGGTTCAGAACGAATGCGACAGCGAAACAAAGACCGATGAGGAAGACGAAACAAAGACTGACTACTCGTGTATGGAGTGCGGTAGAAAATTTAGATTATTAAGCGGTTTAAAGGTTCATTTGGCGAAACATGGTAAAAAACACAAATGCGAAGTATGCAGCAAAGAGTTTTCACTATCCAAACAGTTGAGTAAGCACATGAAATCGCATCCGGACTTTCGACCCTACAACTGTTCGGTGTGTGAGAAAGCGTTCGCCCTGAGCGCCAGTTTGGCGAAGCATATGAGAACGCATGGAGGCGAAAGACGACATCTGTGTACTACTTGCGGCAAACGATTCTACGAACCTAGTCATCTAGTCGTTCATATGCGTACGCATACTGGAGAAAAACCGATCGTTTGTGCTGTTTGCGGAAAAAGATTCTCCGATCCACACGGTCTCGTTGCCCACAACAAAATACATACAGGAGAGAAAAAATATGAATGCGATATTTGCAAGAAGCGATTCGCTCATTCTTTTGTTCTCACGGCTCACCGCAGGGTCCATACCGGGGAGCGGCCCTACGTTTGTTCGGTTTGCAATACGGCCTTCGCTACATCGTCGTATCTTACCATTCACATGCGGACTCACACGAAAGAGAGACCTTACAAATGCAGTCTTTGTCCGAAGGCCTTCATAAGCAAGTGCGCTCTCGTCGCTCACAACATGACTCACACTGGGGAAAAGAGGTTCGTGTGCACGGTATGCGGCAAAAGGGCTGCGCGCGCCGCCGACCTCGCTATACACATGCGCAGTCACACGGGAGAGAAACCATACGCCTGCGACCAGTGCCCCAAACGCTATCACACGTCGAGCAACCTGGCCGCCCACAAACGCAGCCATACCGGCGTCCGGAATCATGTTTGCAGCCATTGTGGCAAAGCGTTCGCCGATGCTCGGACGCTCAAATGTCACATACGAACGCACACGggcGAAAAACCATACATGTGTCAGGTGTGTGGCCATCGATTTGCGCAGTCGGGTCAACTGGCGTCGCATCGAAAGACTCACGCTGTGCCTGCAGTTTCCACCGTTATGGTTCCGGTTCAAATTATGACCGTACAACAATAG
Protein Sequence: MEETLILSNDLNRVCRTCLSEKNLDELQSVFDERVNDMVMELASVKILQNDGLPGVICVQCVLQVGLAYSFKQQCERSDLKLRNILFPLEQQATDEDIYLQSGYSDTVPQIVEENVLENATIEVKYDNTIVKYNNSIVKYDNTIEISNFVKIETVDVSIQVGKSFITKQRPKRSTNTDFFNSLIRDEQMAIDIDINEDRLEVQNECDSETKTDEEDETKTDYSCMECGRKFRLLSGLKVHLAKHGKKHKCEVCSKEFSLSKQLSKHMKSHPDFRPYNCSVCEKAFALSASLAKHMRTHGGERRHLCTTCGKRFYEPSHLVVHMRTHTGEKPIVCAVCGKRFSDPHGLVAHNKIHTGEKKYECDICKKRFAHSFVLTAHRRVHTGERPYVCSVCNTAFATSSYLTIHMRTHTKERPYKCSLCPKAFISKCALVAHNMTHTGEKRFVCTVCGKRAARAADLAIHMRSHTGEKPYACDQCPKRYHTSSNLAAHKRSHTGVRNHVCSHCGKAFADARTLKCHIRTHTGEKPYMCQVCGHRFAQSGQLASHRKTHAVPAVSTVMVPVQIMTVQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01530589;
90% Identity: iTF_01530589;
80% Identity: -