Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: Zbtb41
Assembly: GCA_034508555.1
Location: JAVRKA010000002.1:8559494-8561488[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.023 0.64 11.1 1.5 1 23 203 224 203 224 0.86

2 13 2.9e-06 7.9e-05 23.4 2.1 1 23 230 252 230 252 0.98

3 13 0.0033 0.092 13.8 0.4 1 23 258 280 258 280 0.97

4 13 2.2e-06 6e-05 23.8 0.8 1 23 286 308 286 308 0.99

5 13 1.1e-06 3.2e-05 24.7 1.2 1 23 314 336 314 336 0.99

6 13 0.00028 0.0077 17.2 1.1 1 23 342 364 342 364 0.99

7 13 6.9e-05 0.0019 19.1 1.0 1 23 370 392 370 392 0.98

8 13 1.9e-05 0.00053 20.8 4.2 1 23 398 420 398 420 0.99

9 13 8.1e-05 0.0022 18.9 3.2 1 23 426 448 426 448 0.98

10 13 5.8e-06 0.00016 22.5 2.1 1 23 454 476 454 476 0.97

11 13 1.4e-06 3.8e-05 24.4 3.2 1 23 482 504 482 504 0.99

12 13 1e-05 0.00028 21.7 0.3 1 23 510 532 510 532 0.99

13 13 1.1e-06 2.9e-05 24.8 4.5 1 23 538 560 538 560 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.023	0.64	11.1	1.5	1	23	203	224	203	224	0.86
2	13	2.9e-06	7.9e-05	23.4	2.1	1	23	230	252	230	252	0.98
3	13	0.0033	0.092	13.8	0.4	1	23	258	280	258	280	0.97
4	13	2.2e-06	6e-05	23.8	0.8	1	23	286	308	286	308	0.99
5	13	1.1e-06	3.2e-05	24.7	1.2	1	23	314	336	314	336	0.99
6	13	0.00028	0.0077	17.2	1.1	1	23	342	364	342	364	0.99
7	13	6.9e-05	0.0019	19.1	1.0	1	23	370	392	370	392	0.98
8	13	1.9e-05	0.00053	20.8	4.2	1	23	398	420	398	420	0.99
9	13	8.1e-05	0.0022	18.9	3.2	1	23	426	448	426	448	0.98
10	13	5.8e-06	0.00016	22.5	2.1	1	23	454	476	454	476	0.97
11	13	1.4e-06	3.8e-05	24.4	3.2	1	23	482	504	482	504	0.99
12	13	1e-05	0.00028	21.7	0.3	1	23	510	532	510	532	0.99
13	13	1.1e-06	2.9e-05	24.8	4.5	1	23	538	560	538	560	0.98

Sequence Information

Coding Sequence: atggaAGAAATATTGCTACCCGGAGATAATTTAAGTAATTCATGTAGAGTGTGTTTAACGAAAGACGATGCATTGGTTAATTTATTCACGACGTCGATAAAAATGGATGGTTTAATTGCAAATGCACTCACTGCGTGCGCTCCCGTTCGTGTAAAGAAAAATGACGGGCTTCCGTCATCGATTTGCAATTCCTGTCATTTTCAATTAGAAATTGCGTATCAGTTCCAAAAATTAGCAGTAAAAACGGAAAATACACTTCATAGACATTTAAAACGATCACAGAGGCAGCGCCAGTCAAAGAATGACAGTTCTAAGGAGCTTGAAAGAAACAGTGGCGTACGAAATTCGGATATAAAATTAGAATCATCTGTAAATAGTACAGATTATTTTCATTCACAAAGTAATTCCCCCGATCATCAAACCTTTGAAAAGTattcagataaaaataattgcGAGGACGATAATGAAATCAAATATGAGGACATAAAACAAGAAGTGGATTCATCCGACAGTAACGACGCCGGATTAATCAACGAACCAGAAATAAAAGTAGAATTGAACACAGAGGAAGCAAACAAAGAAAaacccaaaaacaataaaaaattattccagtgtgacgtttgttacaaatattttagtCGTCCCAGTTTATACGTCCATAAACGAATACATACGGGTgaaaaaccgtatcagtgtgataCTTGCGACAAAAGTTTTGTAACATCGGGACATTTGAATGTTCACAAACTTCGACACACCggcgaaaaaaattacaaatgcgAAATTTGTCAGGCGAGATTTCCGTACCTTCAGTCGTTGAATATTCATAAAATCCAACATGGCGGcaagaaaccataccagtgtgacgtttgcagtAAATCTTTCGCTCAGTCGAGTTTACTTCTTGTTCACAAACGTCGACATACCGGTGAAAAACCGTTTAAGTGTGACATTTGCAATCAAGGTTTTATTTCGGCTAGCAATTTGAATAAACACAAACGAAAACACGGCATAGGTAAATTgtacaaatgtgacgtttgcgAAAAAACTTTTGTTTGGTCGAGTGATTTCAATGTTCACAAACGTCGTCATACCGGAGAGAAACCTCATAAATGCAGCTTGTGTGAAATGTCTTTCATCAAAGCGGGAGAATTGCGCGTTCACATGCAGAAACATTCGACGGTCAAAAAGTTTCAGTGTGACATATGCAACAAATACTTTTCACATTTGAGCACGCTTAACATACACAAGCGTAGACATGCTGGTGAGAAGTCACATCAGTGTGAAGTGTGCAGCAAATGTTTTATTCGTTCGAACGATTTGGTCGTGCATAAACGTATACACACGGGAgaaaaaccgtatcagtgtgatatTTGCGGTAAAAACTTTAGTCACGCGCCTAATTTTAGAAAACACAAACTTCTACATGCCGGTGAGAAACCGTACCGATGTGATGTTTGTGAGAAGAGTTTTACACAGTTATCGCACCTGAATACGCATAAACGTGTCCATACgggagagaaaccgtatcaatgcgATATTTGCGGTAAAAGTTTCGCATTGCCCGGTTCATTTAGTATTCATAAGCGAAGACATATAGACGGAAAATCGTATCAATGTGATATTTGCAAGAAATGTTTCACTCAGCCAAGTAGTTTGAAGACGCATAAACGACTGCATGCAGGggaaaaactgtaa
Protein Sequence: MEEILLPGDNLSNSCRVCLTKDDALVNLFTTSIKMDGLIANALTACAPVRVKKNDGLPSSICNSCHFQLEIAYQFQKLAVKTENTLHRHLKRSQRQRQSKNDSSKELERNSGVRNSDIKLESSVNSTDYFHSQSNSPDHQTFEKYSDKNNCEDDNEIKYEDIKQEVDSSDSNDAGLINEPEIKVELNTEEANKEKPKNNKKLFQCDVCYKYFSRPSLYVHKRIHTGEKPYQCDTCDKSFVTSGHLNVHKLRHTGEKNYKCEICQARFPYLQSLNIHKIQHGGKKPYQCDVCSKSFAQSSLLLVHKRRHTGEKPFKCDICNQGFISASNLNKHKRKHGIGKLYKCDVCEKTFVWSSDFNVHKRRHTGEKPHKCSLCEMSFIKAGELRVHMQKHSTVKKFQCDICNKYFSHLSTLNIHKRRHAGEKSHQCEVCSKCFIRSNDLVVHKRIHTGEKPYQCDICGKNFSHAPNFRKHKLLHAGEKPYRCDVCEKSFTQLSHLNTHKRVHTGEKPYQCDICGKSFALPGSFSIHKRRHIDGKSYQCDICKKCFTQPSSLKTHKRLHAGEKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01530592;
90% Identity: iTF_01530592;
80% Identity: -