Vnig012399.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
-
Assembly
GCA_034508555.1
Location
JAVRKA010000034.1:2345934-2350131[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.037 1 10.5 4.0 2 23 297 318 296 318 0.96
2 17 9.9e-06 0.00027 21.7 2.6 1 23 324 346 324 346 0.99
3 17 0.0036 0.098 13.7 2.8 1 23 352 374 352 374 0.97
4 17 0.00011 0.0031 18.4 1.6 1 23 380 402 380 402 0.98
5 17 0.018 0.49 11.5 3.9 1 23 408 430 408 430 0.96
6 17 0.00012 0.0033 18.3 3.1 1 23 436 458 436 458 0.99
7 17 0.00012 0.0033 18.3 2.8 1 23 464 486 464 486 0.99
8 17 1e-05 0.00028 21.7 2.5 1 23 492 514 492 514 0.97
9 17 0.00089 0.024 15.6 6.1 1 23 520 542 520 542 0.98
10 17 1.7e-05 0.00045 21.1 3.8 1 23 548 570 548 570 0.98
11 17 0.00021 0.0057 17.6 3.3 1 23 714 736 714 736 0.96
12 17 0.069 1.9 9.7 3.1 1 23 759 781 759 781 0.91
13 17 1.9e-05 0.00051 20.9 0.8 1 23 787 809 787 809 0.96
14 17 3e-07 8.3e-06 26.5 2.0 1 23 815 837 815 837 0.98
15 17 3.2e-06 8.8e-05 23.3 5.3 1 23 843 865 843 865 0.99
16 17 9.6e-06 0.00026 21.8 1.5 1 23 871 893 871 893 0.99
17 17 0.00071 0.02 15.9 6.1 2 23 900 922 899 922 0.97

Sequence Information

Coding Sequence
ATGAACGAGACATCGTTAACTACATACGATATAAGTACAATGTGTCGATTGTGCTTATCACGCGACGTTACAGGCATcgacatattttcattttcaaccAGATTAAAACATCAGCTGGCTGATATAATCATGAAGTGTTCTCCCGTTCAGGTATCGAAACGGGATGAGATGCCAAAATTCATGTGTCAGTTATGTCACACTCAACTAGAGAAATTTTACCAGTTCCAGATACAAATAATACAATCTGACAAAACCCTACGTCGCTGTTTACAACAACTGCACGCTTCTAATAAACAAAGGAAGTCTGAGTATTCCAGTCAAACACTTTCAGAGGATCCTTTAATCAACATTACTAATCCAGATATAATCACTGTAAAATGTGAATCTTTAGAACAGGACGAGTTGGACATGAATGTAACCTGGAAAGAAAAAAGATCTGCAAGTTGCAGTTCTGAAAATAACGAAGAAATGCCTTTAATATCCGAAATAAAAAGCGAAGTGATTGATGACAATTCATTAATTCCAATTGATTGTGTTGACGTCACATTGGAAATTTTATCTAAATGTGACAATACTGAATTGAACTGTGAAGACTCAAATATTGGTAGTACAGGTGAAATCATGGAAATGTGTAAATCTGAAATCACGGAGGAATCGAAGAATGATAATTCATTAATTCGAAGAGAATATTAtgataatacaaaaaatgcaGCATCTAATGGTGATAGTGAAATCAGTTGCAAAGATACAAGCGTTGATCATGCATCGGGGAAATTCGCGAATCTTCGGTCTGCTGGTAGAAGAGCTTATTATAATAATCGTGAAAAGAGGAACAAAAACACCTCGAAAAATGCTGAGAAGTGCAAAGaaccaaaaaaagtgttatgtAAATGTGATATTTGTGAAGTGACTTTTTCCCGTTTAGAAGATATTAGTAGACACAAATGTATGCATTCTCGAGAGAAATCGTATAAGTGTCTCATTTGTAAAAAGAGTTTCATCCAATATAGTGATTTGAAAATCCACAAACGTAAACATACAAATAAGAAAccttatcagtgtgacatttgttaCAAATGTTTCActcaatcaaaaattttaattaatcacaaacttatacatactggtgagaaaccatatgaGTGTGACGTGTGCAATAAAAGATTCTTTTATATGGGAAATTTAAAATCACACAAACGTATACACACCGGCGAACGACCATATCACTGCGATGTTTGTAACAGGCGATTTAATAATATAGGCCATTTTAACGTCCACAAGCTTCTACATACTGGCGAAagaccatatcagtgtgacgtttgtaatcaTCGTTTCGTTAAGCAATGGATGCTGGAAAAACACAAACGCACACATTCtgatgagaaaccatatcagtgtgacctTTGTGATAAGAGTTTTACTATTAGAAGAAATTTCAGTCTTCACAAACGtactcatactggtgagaaaccatacaaGTGTATTGTTTGTGATAAACGTTTCAACAATTCAAGCAATTTGAATAAACATAAACGAatgcatactggtgagaaaccatatgaaTGTAATCTTTGTAGTAAACGTTTTAACAGTTCAAGCCATTTACATGAACATAAGCTTcgacatactggtgagaaaccccATCAGTGTAACGTTTGTAATATGTGTTTTGTTACACCAGGAAGTTTGAGAAAACACCAACGTCTTCATACTAGTGAAacacaaaatagtttatattcagtaaataaaattaacgaaataACATTTACAAAGCCTGAAATTCCAGACATACCCCTGAACTATTCATTAATTTCAACAGAATGTACTAATGACATAGCAGAAATATTATCAAAAGTTGATGATATGGAAGTCTACCGTGAAGACTCAAAAAGTAACGTTGGTGTCCCAAAATTAGGTGAGGACATGCACGTCAACTGGAAGGAGAAAGGATCTACGAGTTTCAGATCAGAGAAAGATAATGATCCATCAAATATAGGTAACACCAATTATAGTAGTGAAATCGGTGGCGAAAACATGTCGGGAAACTTCGAGAACCTTCGTTCTTCTAATGCAACGGAATATTTGGATGAATGTGGAGAGGGGAGTAACGAAACCAAGAAAGGAAATAAACACGACTTCTATCGGTGTAACGTTTGTGACACGTATTTCACACATTCATCAAGTTTAAGCAGACACAAGCTTGGTCATACTGaagagaaaccTAATTCAAGTCATCTAAATGAACATAAGTTTCGACATACTGGTGAAGCACCGCatcggtgtgacgtttgtaataaatgttttactgatgcgttaattttaaaacaacacaAACTTGGACATTCTGACGAGAAACCGTATCTATGTGACCTTTGTGATAGAACTTTTACCAAACCATACCAATTAAATGTTCATAAACGCAttcatactggcgagaaaccatatAAGTGTGACATTTGTGATAAAAGTTTCAACACTTCTAACAATTTAAGAAAACACAACCGTATTCATACTGGCGAAAAGCCatataaatgtgacgtttgtgataAGTGTTTCACTTATTCGAGTACTCTGAGTACTCATAGACGAACGCATACTGGCgaaaaaccgtatcagtgtgacatttgtaataagagtttgtACAATTCAAGTTATTTAGAAAAACATaaacgtatacatactggtgagaaacaaAGTCAGTGTGACCAGTGTAGTAAGTGTTTCACTCATccaaacagtttaaaatatcACAAGCGTACTGTACATTCGTGA
Protein Sequence
MNETSLTTYDISTMCRLCLSRDVTGIDIFSFSTRLKHQLADIIMKCSPVQVSKRDEMPKFMCQLCHTQLEKFYQFQIQIIQSDKTLRRCLQQLHASNKQRKSEYSSQTLSEDPLINITNPDIITVKCESLEQDELDMNVTWKEKRSASCSSENNEEMPLISEIKSEVIDDNSLIPIDCVDVTLEILSKCDNTELNCEDSNIGSTGEIMEMCKSEITEESKNDNSLIRREYYDNTKNAASNGDSEISCKDTSVDHASGKFANLRSAGRRAYYNNREKRNKNTSKNAEKCKEPKKVLCKCDICEVTFSRLEDISRHKCMHSREKSYKCLICKKSFIQYSDLKIHKRKHTNKKPYQCDICYKCFTQSKILINHKLIHTGEKPYECDVCNKRFFYMGNLKSHKRIHTGERPYHCDVCNRRFNNIGHFNVHKLLHTGERPYQCDVCNHRFVKQWMLEKHKRTHSDEKPYQCDLCDKSFTIRRNFSLHKRTHTGEKPYKCIVCDKRFNNSSNLNKHKRMHTGEKPYECNLCSKRFNSSSHLHEHKLRHTGEKPHQCNVCNMCFVTPGSLRKHQRLHTSETQNSLYSVNKINEITFTKPEIPDIPLNYSLISTECTNDIAEILSKVDDMEVYREDSKSNVGVPKLGEDMHVNWKEKGSTSFRSEKDNDPSNIGNTNYSSEIGGENMSGNFENLRSSNATEYLDECGEGSNETKKGNKHDFYRCNVCDTYFTHSSSLSRHKLGHTEEKPNSSHLNEHKFRHTGEAPHRCDVCNKCFTDALILKQHKLGHSDEKPYLCDLCDRTFTKPYQLNVHKRIHTGEKPYKCDICDKSFNTSNNLRKHNRIHTGEKPYKCDVCDKCFTYSSTLSTHRRTHTGEKPYQCDICNKSLYNSSYLEKHKRIHTGEKQSQCDQCSKCFTHPNSLKYHKRTVHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-