Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: Zbtb41
Assembly: GCA_034508555.1
Location: JAVRKA010000002.1:8571185-8572940[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0068 0.19 12.8 1.6 2 23 197 217 196 217 0.96

2 13 5.9e-06 0.00016 22.5 2.0 1 23 223 245 223 245 0.98

3 13 0.002 0.055 14.5 3.2 1 23 251 273 251 273 0.97

4 13 2.4e-06 6.7e-05 23.7 0.7 1 23 279 301 279 301 0.98

5 13 7.2e-06 0.0002 22.2 4.6 1 23 307 329 307 329 0.99

6 13 6e-06 0.00017 22.4 1.2 1 23 335 357 335 357 0.99

7 13 6.4e-06 0.00018 22.4 0.6 1 23 363 385 363 385 0.96

8 13 9.7e-06 0.00027 21.8 4.3 1 23 391 413 391 413 0.98

9 13 0.00015 0.0043 18.0 4.7 1 23 419 441 419 441 0.98

10 13 8.4e-06 0.00023 22.0 0.3 1 23 447 469 447 469 0.97

11 13 3e-06 8.4e-05 23.4 5.2 1 23 475 497 475 497 0.99

12 13 1.5e-05 0.00042 21.2 0.5 1 23 503 525 503 525 0.98

13 13 2.7e-06 7.5e-05 23.5 5.2 1 23 531 553 531 553 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0068	0.19	12.8	1.6	2	23	197	217	196	217	0.96
2	13	5.9e-06	0.00016	22.5	2.0	1	23	223	245	223	245	0.98
3	13	0.002	0.055	14.5	3.2	1	23	251	273	251	273	0.97
4	13	2.4e-06	6.7e-05	23.7	0.7	1	23	279	301	279	301	0.98
5	13	7.2e-06	0.0002	22.2	4.6	1	23	307	329	307	329	0.99
6	13	6e-06	0.00017	22.4	1.2	1	23	335	357	335	357	0.99
7	13	6.4e-06	0.00018	22.4	0.6	1	23	363	385	363	385	0.96
8	13	9.7e-06	0.00027	21.8	4.3	1	23	391	413	391	413	0.98
9	13	0.00015	0.0043	18.0	4.7	1	23	419	441	419	441	0.98
10	13	8.4e-06	0.00023	22.0	0.3	1	23	447	469	447	469	0.97
11	13	3e-06	8.4e-05	23.4	5.2	1	23	475	497	475	497	0.99
12	13	1.5e-05	0.00042	21.2	0.5	1	23	503	525	503	525	0.98
13	13	2.7e-06	7.5e-05	23.5	5.2	1	23	531	553	531	553	0.98

Sequence Information

Coding Sequence: atggaGAAAATGGATACATTTATTATAAccgatgataacattaataaattgtGTAGAGTATGTCTAAATAAGAagaacttattaattaatatatttactgTATCCTCGAAATTCGGAGGTCCTGTTATGAACGCTATAATTTCTTGCGCCCCCGTTCATataACAAAAGATGACGGACTGCCATCATCGATATGTAAGTCTTGTAATAAGCAACTAGAAATAGCttataattttcaaactgtAGCCTTGAAATCAGATCAAACTCTGCAAACATATCTAAATCTCAAACAAAAAGAATTGATCAAGTCAAGGTTAGCTTCGTCAGATGATGATTGTACGAATGGAACAaagtacaaatattttgaaatgaaaaacaatgcTGTGGATAACAGTGAAGAAGATATAAAATTGGAAATATCAATTGATTCCACAAGttcgaaacattttctttttgaagaAAACGTATGTCAAAATTCTACATCGAAAAAGAATCATGACATAAAATTAGAGAACGATGATAAAAAAGTTAGAGCCAATTTCACATCAAacagtgtaaaaaataaatcgaatcaTAACAAAAAACTAGTTCAGTGTGACGTctgtaaaaagttttataatcgTTCTAGTTTATACACTCATAAACGTATCCACACAGGTGAGAAACCTTACAACTGTGAAGTTTGCGACAAGAAATTTATCTCATCAGGTCATTTAACAGTTCACAAACGCAGTCATACcggtgaaaaaaaatacaagtgtgATATTTGTCATGCGCGTTTCACTTATTTGGAGACATTGACGACTCATAAATCACAACACGAAGGCGGAAAACCATTTCAATGCGAAATATGCAGCAAAACGTTTGCACGTTCAAGTGCGTTACTCGTCCATAAACGTCagcataccggtgagaaaccttaTCGCTGTAAAGCCTGCAACAAGAGCTTCGTTTCGGCAAGTCACTTAAACAAGCATAAAAGGAAACATGGACCGACAAATAAGTATAAATGCGATATCTGTGATAAAACATTCACTTGGTCGAGTGACTTGAACATCCACAAACGCCGACACGCCGGCGAAAAAAGTCACCGTTGTGAAATTTGCGGCAAAACATTTATCCGAGCCGGCGAACTTCGCGTTCACAACTTGAAACATACAGGAGAAAAGAATCACCAGTGTGATATTTGCAACAAGTTCTTTTCCCGTTTGTCCACACTGACAATACACAAACGTAGACATGCCGGTGAAAAACCGCATCAGTGTGAAGTATGCAGCAAATGTTTTATACGCTCGAACGATCTGTTGGTACATAAACGTCGACATACCGGAGAAAAACCATACCAATGTGACGTTTGCGGCAAGAGCTTCGTTGACGCACCTAATTTCAGTAAGCATAAACTGTTACATAGCGGAGAAAAACCGTACCGGTGTGATATTTGCAACAAATGTTTTACGCAAACGAGTAGTTTGAAAACACATAAACGCGTACATACGGGCGAGAAACCATACCAATGTGACGTTTGCGGCAAGAGTTTTGCTGTTGCCAGTTATTTTAGCATACATAAACGTCAACATAGAGAAGATAAACCTTATCATTGTGAAATTTGCAACAAGTGCTTCACGCAACCAAGTAGTTTAAATACCCATAAACGTGTACATTCTGAAACAAAACTGTAA
Protein Sequence: MEKMDTFIITDDNINKLCRVCLNKKNLLINIFTVSSKFGGPVMNAIISCAPVHITKDDGLPSSICKSCNKQLEIAYNFQTVALKSDQTLQTYLNLKQKELIKSRLASSDDDCTNGTKYKYFEMKNNAVDNSEEDIKLEISIDSTSSKHFLFEENVCQNSTSKKNHDIKLENDDKKVRANFTSNSVKNKSNHNKKLVQCDVCKKFYNRSSLYTHKRIHTGEKPYNCEVCDKKFISSGHLTVHKRSHTGEKKYKCDICHARFTYLETLTTHKSQHEGGKPFQCEICSKTFARSSALLVHKRQHTGEKPYRCKACNKSFVSASHLNKHKRKHGPTNKYKCDICDKTFTWSSDLNIHKRRHAGEKSHRCEICGKTFIRAGELRVHNLKHTGEKNHQCDICNKFFSRLSTLTIHKRRHAGEKPHQCEVCSKCFIRSNDLLVHKRRHTGEKPYQCDVCGKSFVDAPNFSKHKLLHSGEKPYRCDICNKCFTQTSSLKTHKRVHTGEKPYQCDVCGKSFAVASYFSIHKRQHREDKPYHCEICNKCFTQPSSLNTHKRVHSETKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01530568;
90% Identity: iTF_01530568;
80% Identity: -