Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000016.1:5574489-5586918[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0017 0.047 14.7 2.9 1 23 239 261 239 261 0.98

2 18 0.0027 0.074 14.1 1.3 1 23 267 289 267 289 0.98

3 18 3.4e-05 0.00093 20.1 1.3 1 23 295 317 295 317 0.98

4 18 0.0006 0.017 16.1 1.9 1 23 917 939 917 939 0.98

5 18 0.00064 0.018 16.1 1.5 1 23 945 967 945 967 0.99

6 18 0.00021 0.0057 17.6 0.3 3 23 1003 1023 1001 1023 0.97

7 18 3.1e-05 0.00084 20.2 3.7 1 23 1324 1346 1324 1346 0.98

8 18 2.3e-05 0.00063 20.6 2.6 1 23 1352 1374 1352 1374 0.98

9 18 7.2e-05 0.002 19.0 5.6 1 23 1380 1402 1380 1402 0.98

10 18 3.7e-05 0.001 19.9 0.8 1 23 1408 1430 1408 1430 0.99

11 18 5.2e-05 0.0014 19.5 0.7 1 23 1697 1719 1697 1719 0.98

12 18 1.6e-05 0.00043 21.1 5.0 1 23 1725 1747 1725 1747 0.98

13 18 9.7e-05 0.0027 18.6 2.4 2 23 1754 1775 1753 1775 0.98

14 18 0.00036 0.01 16.8 5.6 1 23 1781 1803 1781 1803 0.98

15 18 0.00038 0.01 16.8 5.4 2 23 1810 1831 1809 1831 0.97

16 18 0.00074 0.02 15.9 1.9 1 23 1837 1859 1837 1859 0.98

17 18 0.00066 0.018 16.0 5.5 1 23 1865 1887 1865 1887 0.98

18 18 0.023 0.64 11.2 7.7 1 23 1893 1915 1893 1915 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0017	0.047	14.7	2.9	1	23	239	261	239	261	0.98
2	18	0.0027	0.074	14.1	1.3	1	23	267	289	267	289	0.98
3	18	3.4e-05	0.00093	20.1	1.3	1	23	295	317	295	317	0.98
4	18	0.0006	0.017	16.1	1.9	1	23	917	939	917	939	0.98
5	18	0.00064	0.018	16.1	1.5	1	23	945	967	945	967	0.99
6	18	0.00021	0.0057	17.6	0.3	3	23	1003	1023	1001	1023	0.97
7	18	3.1e-05	0.00084	20.2	3.7	1	23	1324	1346	1324	1346	0.98
8	18	2.3e-05	0.00063	20.6	2.6	1	23	1352	1374	1352	1374	0.98
9	18	7.2e-05	0.002	19.0	5.6	1	23	1380	1402	1380	1402	0.98
10	18	3.7e-05	0.001	19.9	0.8	1	23	1408	1430	1408	1430	0.99
11	18	5.2e-05	0.0014	19.5	0.7	1	23	1697	1719	1697	1719	0.98
12	18	1.6e-05	0.00043	21.1	5.0	1	23	1725	1747	1725	1747	0.98
13	18	9.7e-05	0.0027	18.6	2.4	2	23	1754	1775	1753	1775	0.98
14	18	0.00036	0.01	16.8	5.6	1	23	1781	1803	1781	1803	0.98
15	18	0.00038	0.01	16.8	5.4	2	23	1810	1831	1809	1831	0.97
16	18	0.00074	0.02	15.9	1.9	1	23	1837	1859	1837	1859	0.98
17	18	0.00066	0.018	16.0	5.5	1	23	1865	1887	1865	1887	0.98
18	18	0.023	0.64	11.2	7.7	1	23	1893	1915	1893	1915	0.96

Sequence Information

Coding Sequence: ATGTCTGAAATATCAATAACTGACTTTGGCCTAAATACATTGTGTCGGTTGTGCTTATCGAGTGGCTTCGCGACATTAGACTTGTTTTCCTATGTGGCTAGTTTTAAAGACTTGATAGCTAATACAGTAATGAATTGTGCTCCAGTTCAGATAAGTAGTGGTGACGggatgccaaatttcatctgtcaaaaatgttacacTAGGCTGGAAAAAACTCATCAATTTCAGATGCAGATTGTACAGTCTGAGAAAACTCTGCGGCGCTATTTAGGGCAAGTACGTGGTTATGACAAAAAAACGAATCTCGAGAGTTCCTCTCAGAGACCGTCCAAGTATTCTTTGACCGAAAACACTAACGCAAACATAATTGCGAAATGCAAATCTTCGGAAGTTCAAGACGTCGTGTCTTACAGCGGAGAGAATGAATATGAAATTTTGGATTCAGTAAGCAGAATTGACAATGAATTAACTTCAAAATCCAAAATCAAAGTGGAACGAATTGATGATGACTCACCGAGTCCAGCAACATGCGCTGATGTAAAACGGTTGTGTGAGGGTGCAGAGGGGAGCACAGATATCGACATTGAAGATAGTAATTTGGAAAAAGGGGGACTTGCAAATTTGAACTCAACATATAAAACTAACGAAGAAGTGTCCACAAACTTCGATATAAATATGAAGGTTCACAACTTTACAGACACTGACATGAAATTTcataaatgtgacgtttgtaaaaagagtTTCGCTATCTTAAACAACTTAAAAACTCACAAACTAACTCATACAGGTGAGAAACCTTACAAATGTGATGTTTGTGAAAACTCTTATACTACATCAACGTATTTAAAACTTCACAAAATGATACATAATGGTGAGGAGCCATATGAATGTAACGTTTGCAATAAAAGATTTACTAAAGTaagcaatttaaatactcacaaacttgTACATACAGAGAAAGAATATGAAATGTTGCATTCAGTAAGCAAAATTAACAATGAATTGACTTCAAAACCCAAAATCAAAGCTGAACGAATTGACGATGACTCGCCGAGTCCAGCAGAATGCGCTGGTGAGAAAGTAAAACTTTCGTATGATGGTGGAGAGGGGAGCACAGATAtccacattaaaaatattaaattagaaGAGGAGCGACTtgcaaatttcaactcaaaaaCTAACGAAGAAGTGTCAACAACGGTCAAAATAAAAGACGAGCCAATGGATGATAATTCTCTAATTCCAGCCGATAGTGCTAGTAAcaccatagaaactgtatttgtAGGCGGTGGGTGTGAACTCAACTTTGAGAACTCAAAAACCGATATCGGCGACATTAAATGTGTCGACAACATAGGCGTCAATGGGAAAGAGATTGAACCTGCAAATTTGAGGTCAACAAACACAACAATCAAGgaaatgtctttaaaatgcGAAATTAAAGACGAACCGATGGACAATTCGTTAATTCCGACAGATTGTATAAACGACTCAGTAAACGATTTTTCTAAAGGGGATGATGAAATAGGTTGCGAAGACACAAACATCGGTTTTGACGGCGCTTCTGCATGTCTTCGCTCCTCTGATCTAGAAGAGGATTTCGAAAATTTTGAAGAGGAAAGTATAAGCGCCTCAGTGAAACGTGAGAAACAGAGACAAGAAGATAAAGTGATGCCGCCccaattaaatataaatgagaCGTGTTCTCCTCGCAGAGAAAGTGACACATATTCAAGCTATTTCAATGCCAACAAACTTATTCATACAGATAAGATCATTGTGAAGTGCGGTTCTTCGGAATTTCGTGACGTCATGTCTATCAGGGgagaaaatgaaattttgcatacagtAAGCAAAATTAACAATGAATTGATTTCAAAATCCAAAATCAAAGTGGAACGAATTGATGATGTCACACCGGATCCAGCAGAATGCGATGGTGACAAAGTAATAAAGTATGACGATGGAGAGGGGAGCACAGATattcacattaaaaatattaaattggaaGAAGGGGGacttgaaaatttcaactcaacGTATAAAAGTAATGAAGAAATCTCTACAAAGGTCAAAATAAAAGACGAGCAAATGGATGATAATTCTCAAATTACAGTCGAGTGTGCTAGTAACACAATGAAAACTATATTTGGGAGCGGTGGTTTTAAAATCAACTTTGAGGACTCAAAGACCGACATCGGCGACATTAAATTTGCCGGCAACATAGACGTCAACTGGAAAGAGAGTGAACCTGCAAATTTGAACACAGCAAGCACAACTATCAAGGAAATGCCTTTAAAATTCGAAATTAAAGACGAACCAATGGACCGTTCGTTAATTCTAACAGATTTTATTAGCGACTCAGTAAACGATTTTGCTAAAGGAGATGATGAAATCAGTTGCGACAATACAAAAATCGGTTTTGACAGCGCTTCCGCATGTCTTCGCTCCTCTGATCTAGAAGAGGATTTTGAAAAAGAGGGAAATATAGGCCCCTCAGTAAAACGTGCAAAACACAGACAAGGAGATAAAATGAAGTCGCcccaaataaatataaatgagaCGTGTTCTCCTCGCAGAGAAAGTGACACAAATTCATGTATTATAAAAACGCACAAACGAGCGCATGCTAACGAAAAATCATATAAGAGAAACGTAAGCATTTTAAATACCCACAAGCTTATTCATACAAGTGAAAAACCATACAAATCTGACGCTGGGAAATTTGCAGACACTGGTATGAAGCTTtttaaatgtgacgtttgtaaaaagaatTTCGCTATGTTAAACAATTTGAAAACTCACAAACTAACTCATACAGATGAGAAACcttacaaatgtgacgtttgtaaaaagggTTTCGATATgctaaacaatttaaaaactcaCAAACTTACACATACAGGGGAGAAACCTGACAAATGTCGCGTTTGTATAAACGCTTTTACTACATCAACGTATTTAAAACTTCGCAAAATGATAGATACTGATGTGGAAACATATGGGTGCAACGTTTGCAATAAAAGATTTACTAATGTAAGTGATTTAAATGCTCACAAACTTGTACATACAGAgatagaaaatgtaattttgcatTCAGTAAGCAAAATTTCCAATGAATTGACTTCAAAACCCAAAATCAAAACCGAACGAATGGACGATGACTCACCGAATTCAGTAGAATGCGCTGGTGACAAAGTAACACTTTCGTATGATGGTGGAGAGGGGAGCACAGATATccacattaaaaatgttaaattagaaGAGGAGGGATTtgcaaatttcaactcaaaaaCTAACGAAGAAGTGTCAACAACGGTCAAAATAAAAGACGAGCCAATGGATGATAATTCTCTAATTCCAGCCGAGTGTGCTAGTAAcaccatagaaactgtatttgtAGGCGGTGGGTGTGAACTCAAATTTGAGGACTCAAAAACCGATATCGGCGACATTAAATGTGTCGACGACATAGACGTCAACGGGAAAGAGAGTGAACCTGCAAATTTGAGCTCAACAAACACAACAGTCAAGGAAATGTCGTTAAAATGCGAAATTAAAGACGAACCTATGGACAGTTCGTTAATTCCGACAGATTGTATAAACGATTTTTCTAAAGGGGATGATGAAATGGGTTGCGAAGATACAAAAATCAGTTTTGACGGCGCTTCTGCATGTCTTCGCTCCTCTGATCTAGAAGAGGATTTCGAAAATTTTGAAGAGGAAAGTATAAGCGCCTCGGTAAAACGTGAAAAACACAAACAAGGAGATAAAATGATGCCGCaccaattaaatattaatgagaCGTGTTTTCCTCGCAAAGAAAGTGACACAaattcacgtattttaaaaacacacaaACGTGAAGATTCTAATGAGGAATCATATGAGAGTAATGTTAGCAATAAAAGTTTTCcgaaaataagcattttaaattctCGCGAACTTGTACATACAGGTGAAAAACcttacaaatgtgacgtttgtgaaaagTGTTTCTCTCATTTAGGCAATTTAAAGGCTCATAAAGCTACGCATACAGGCGAGAAACCTTACATATGtaacgtttgtaaaaaatgtttctctcGTGAAGGTAACTTAAAGATTCACAAAATTACTCATACAGGCGAGAAACCTTACAAATGTAACGTTTGTGAAAAGTGTTTCTCTCAtttaagcaatttaaaaattcataaagtTACACATACATGCGAGAAACCTTACAAATGTGATGGTTGTAAAAAGAATTTCGCTCTGTTAGCTAATTTAAAGGCCCATAAACGTACACATTCAGtaaacaaaattaacaatgaaGTCATTTCAAAATCCAAAATCAAAGTGGAACGAATTGATGATGACTCACCGGATCCAGCAGAATGCGCTGGTgacaaagaaaaatttttgtttgaggACGAAGGCGGGAGCACAGATATCcacattgaaaatattaaattggaaGAGGAAGGACTTGTAAATTTCAACTCAACGTATAAAAGTAATGAAGAAATCTCTACAAAGGTCGAAATAAAAGACGAGCAAATGGATGATAATTCTCTAATCCCAGCCGAGTGTGCTAATAACgcaataaaaactttatttggGGGCGGCGGTTTTGAACTCAAGTTTGAGGACTCAAAGATCGACATCGGTGACATTAAATTTGTCGACGGCATAGACGTCAACTGGAAAGAGAATGAACCTGCAAATTTGAACTCAGCAAGCACAACAATCAAGGAAATGCCTTTAAAATACGAAATTAAAGACGAACCGATAGACAGTTCGCTAATTCCGGCAGATTGTATTAACGACTCAGTAAACGATTTTTCTAAAGGGGTTGATGAAATCAGTTGCGAAGATACAAAAATCGGTTTTGACGGAGCTTTTGCATGTCTTCGCTCCTCTGATCTAAAAGAGGATTTTGAAAAAGAGGAAAGTATAGGCACCTCAGTAAAACGTAAGAAACACAGACAAGGAAATAGAAAGAAATTGCCCCAACTAAATATAAATGAGACGTGTTCTCCTCGCAGAGAAAGTGACACAAATTCATGTGTTTTAAAAACACGCAAACAACATTTAAATGAGAAGTCATATGAGTGTAacgtttgcaataaaatatttactaaagTAAGCAATTTAAATTCTCACAAACTTGTACACACAGGTGAAAAACCttataaatgtgacgtttgtaaaaagtgcttctCCCGTTCAGACAATTTAAAAACTCATAAAGTTACACATACAAGCGAGAAACCAAACAAATGTGATGTCTGTAATAAGTTTTTCTCATCTTCACGCAATTTAAATTATCACAAACGTGTACATACAGGCGAAAAACcttacaaatgtgacgtttgtaaaaagtgtttctacCGTTCAGACACTTTAAAGACTCATAAAGTTACACATACAGCCGAGAAACCAATCAAGTGTGATGTctgtaataagtgtttctctCATTTAAGCTATTTAAAGACTCACAAAGCTACACATGCAGGCGAGAAATcttacaaatgtgacgtttgtaataagtatttCTCTTATTTGCGCAGTTTAAATTCTCACAAACTTGTACATTCAGGTGAAAAGCCctacaaatgtgacgtttgtaaaaagtgtttctctTATTTACGCAGTTTAAATTCTCACAAACGtttacatacagGTGAGAAACCTTACAAATGTGAGTTTTGTAATCAGTGTTTCTCTTATTCACACTATTTAAAAACTCACAAACTTGCACATACTGATGTGAAACTTGATAAATGTGACGCATAA
Protein Sequence: MSEISITDFGLNTLCRLCLSSGFATLDLFSYVASFKDLIANTVMNCAPVQISSGDGMPNFICQKCYTRLEKTHQFQMQIVQSEKTLRRYLGQVRGYDKKTNLESSSQRPSKYSLTENTNANIIAKCKSSEVQDVVSYSGENEYEILDSVSRIDNELTSKSKIKVERIDDDSPSPATCADVKRLCEGAEGSTDIDIEDSNLEKGGLANLNSTYKTNEEVSTNFDINMKVHNFTDTDMKFHKCDVCKKSFAILNNLKTHKLTHTGEKPYKCDVCENSYTTSTYLKLHKMIHNGEEPYECNVCNKRFTKVSNLNTHKLVHTEKEYEMLHSVSKINNELTSKPKIKAERIDDDSPSPAECAGEKVKLSYDGGEGSTDIHIKNIKLEEERLANFNSKTNEEVSTTVKIKDEPMDDNSLIPADSASNTIETVFVGGGCELNFENSKTDIGDIKCVDNIGVNGKEIEPANLRSTNTTIKEMSLKCEIKDEPMDNSLIPTDCINDSVNDFSKGDDEIGCEDTNIGFDGASACLRSSDLEEDFENFEEESISASVKREKQRQEDKVMPPQLNINETCSPRRESDTYSSYFNANKLIHTDKIIVKCGSSEFRDVMSIRGENEILHTVSKINNELISKSKIKVERIDDVTPDPAECDGDKVIKYDDGEGSTDIHIKNIKLEEGGLENFNSTYKSNEEISTKVKIKDEQMDDNSQITVECASNTMKTIFGSGGFKINFEDSKTDIGDIKFAGNIDVNWKESEPANLNTASTTIKEMPLKFEIKDEPMDRSLILTDFISDSVNDFAKGDDEISCDNTKIGFDSASACLRSSDLEEDFEKEGNIGPSVKRAKHRQGDKMKSPQININETCSPRRESDTNSCIIKTHKRAHANEKSYKRNVSILNTHKLIHTSEKPYKSDAGKFADTGMKLFKCDVCKKNFAMLNNLKTHKLTHTDEKPYKCDVCKKGFDMLNNLKTHKLTHTGEKPDKCRVCINAFTTSTYLKLRKMIDTDVETYGCNVCNKRFTNVSDLNAHKLVHTEIENVILHSVSKISNELTSKPKIKTERMDDDSPNSVECAGDKVTLSYDGGEGSTDIHIKNVKLEEEGFANFNSKTNEEVSTTVKIKDEPMDDNSLIPAECASNTIETVFVGGGCELKFEDSKTDIGDIKCVDDIDVNGKESEPANLSSTNTTVKEMSLKCEIKDEPMDSSLIPTDCINDFSKGDDEMGCEDTKISFDGASACLRSSDLEEDFENFEEESISASVKREKHKQGDKMMPHQLNINETCFPRKESDTNSRILKTHKREDSNEESYESNVSNKSFPKISILNSRELVHTGEKPYKCDVCEKCFSHLGNLKAHKATHTGEKPYICNVCKKCFSREGNLKIHKITHTGEKPYKCNVCEKCFSHLSNLKIHKVTHTCEKPYKCDGCKKNFALLANLKAHKRTHSVNKINNEVISKSKIKVERIDDDSPDPAECAGDKEKFLFEDEGGSTDIHIENIKLEEEGLVNFNSTYKSNEEISTKVEIKDEQMDDNSLIPAECANNAIKTLFGGGGFELKFEDSKIDIGDIKFVDGIDVNWKENEPANLNSASTTIKEMPLKYEIKDEPIDSSLIPADCINDSVNDFSKGVDEISCEDTKIGFDGAFACLRSSDLKEDFEKEESIGTSVKRKKHRQGNRKKLPQLNINETCSPRRESDTNSCVLKTRKQHLNEKSYECNVCNKIFTKVSNLNSHKLVHTGEKPYKCDVCKKCFSRSDNLKTHKVTHTSEKPNKCDVCNKFFSSSRNLNYHKRVHTGEKPYKCDVCKKCFYRSDTLKTHKVTHTAEKPIKCDVCNKCFSHLSYLKTHKATHAGEKSYKCDVCNKYFSYLRSLNSHKLVHSGEKPYKCDVCKKCFSYLRSLNSHKRLHTGEKPYKCEFCNQCFSYSHYLKTHKLAHTDVKLDKCDA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -