Vnig012410.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
-
Assembly
GCA_034508555.1
Location
JAVRKA010000034.1:2404812-2425732[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00071 0.02 15.9 2.3 1 21 364 384 364 385 0.96
2 16 0.028 0.78 10.9 1.3 1 23 551 573 551 573 0.98
3 16 4.4e-06 0.00012 22.9 4.7 1 23 750 772 750 772 0.98
4 16 0.3 8.3 7.6 3.7 1 21 957 977 957 978 0.95
5 16 8.7 2.4e+02 3.1 3.2 1 11 986 996 986 999 0.93
6 16 2.3e-05 0.00064 20.6 5.3 1 23 1178 1200 1178 1200 0.98
7 16 0.0029 0.081 14.0 1.5 1 23 1206 1228 1206 1228 0.98
8 16 4.3e-06 0.00012 22.9 1.4 1 23 1234 1256 1234 1256 0.98
9 16 0.00051 0.014 16.4 1.8 1 23 1262 1284 1262 1284 0.98
10 16 0.00012 0.0032 18.4 0.1 1 23 1290 1312 1290 1312 0.98
11 16 2.9e-06 7.9e-05 23.4 1.0 1 23 1318 1340 1318 1340 0.99
12 16 6e-05 0.0017 19.3 0.3 1 23 1346 1368 1346 1368 0.98
13 16 6.9e-07 1.9e-05 25.4 1.7 1 23 1374 1396 1374 1396 0.99
14 16 1.5e-05 0.00042 21.2 0.7 1 23 1402 1424 1402 1424 0.99
15 16 6.6e-07 1.8e-05 25.5 2.5 1 23 1430 1452 1430 1452 0.99
16 16 1.8e-05 0.00049 20.9 2.4 1 20 1458 1477 1458 1480 0.96

Sequence Information

Coding Sequence
ATGGAAAACATATTATTTCATGAAAAAATTATCAGTGGCATGTGCCGTCTATGTTTATCAAGCAACGGAACATTAATTGATATGTTCTCGTTTTCATCAGAACTGGGAAGTCAGATTGCAAATGCTGTCACAAAATGTACTTCCGTTCACGTAGTGAAACACAGAGAATTACCTTCAACAATTTGTGAGCTTTGTTACATTCAACTTATCAGAACGCAGAATTTCCAAATACAGGCGCTTAAATCTGACAGAACCTTCCAGATTTATCTGCAACGATTGCACGATGATAAAAGTCTACTTGAAAGTGCAGTAATTCCTCCAGGTACTCACGGGGATTCTTGCATTGAAACCAATTCTACTAAGCAGGATAAGGAAGATAACAATACTAACTGTGAAGAAGTAAAGCCTGAGGTTAAATATTCCGTAGGCAGTTGTGAAGAACCCGAAATGgatattgtagaaaataaagtttttgcGTCAGGTTCAAAATCTCATACGGAATGGAATGATCATAGTTGTAACAAAGATCCAGCTTTTAATCCTAACTTAATTGTAGAGAAACATAGCGAATTGCCTTCAATTATATGTGAGCATTGTTACGGACAACTGATCAGAACGCAGAATTTCCAAATAAAGGCACTTAAATCTGATAAAACCTTGCGATTTTATCTTCAACAATTGCAAAGTGATGATAAACAGAGTTTACTTGGCAGTTCAGTAATACTTCCAGATATTGACGACAATATTTGCGTTGAAACCAGCGTTGCAGATCAGAACAAAGAAAAGAACAGTATcaactgtaaagaaataaagcCAAAACTTGAAGATTCCGAAAGCGATTATGAAGAATTTAAAATGAACATtgcaaaaaatacagtttttacaTTAGATTTAAAGTCTCATACGGAATGGGATACTCATAGTTCTAACAAAGACTCTGTTTTTAATCCTAACTTGATTGTCAAGGCTGAACCTATAAATGACAAAGATCTGTGTGACGATGATACCGGAATATTAAATGATTACTCGATAAAACAGAAGAATATAAAATCGGACAACGAAGATTCTGATAGTCAAATGATATCGtcttatcagtgtgacgtttgtaaacaTTGTTTTAGCAAACCAGTTACTTTGAAAGAACATCAACGtatagaGAAGGATAGCGAATTGCCTACAACTATATGTGAGTCTTGTTACATGCAACTTATTAGCACGCAAAATTTCCAAATGCAGGCGCATAAATCTAATACAACCCTGCAGCTTTATCTCCAACGATTGCAAAATgatgataaacaaaaaatacttgaaagttCATTTATACTTTCAAATGTTGGCGGGAATTCTTACGTTCAAACTAACGTTGGTAATCAGGATAATGTAGTGCACAGTACCGACATTGAGGAAATGAAGCATGATGTTAAATATTTCGCAAGCGGTTTTGAAGAATATGAAGTGGATATTATAGAAAAGAAATGGGATATAAATGATTCTGAAGAGGGTTCAACGTTTAATCCTAACTTGATTTTAAAAGCAAAGCCTAAAACGAATGAAGACGAGAAAGAAGACCACATTGATGATGTTTTCTcgctaaatcagaaaaacatTAAATCAGAGAACGAAATAACCAGTGATAAGATGATAGcttcatatcagtgtgacgtctgtaaaaaatattttaacgattTAGATATTTTGAGAGAACACCACCTCGTACATACGGTAGAGAAACATAGCGAGTTGCCTACAACTATATGTGAGTCTTGTTACGTGCAACTCATTAAAACACAGACTTTTCAAATGCAAGCGCTTAAATCTGATAGAACTCTGCAGATCTATTTCCAACGATTGCAGAATGATGATCAAAGCATACCTGGGAGTGTAGCAATACTTCCAGATATTGAAGGTCATTGCATTCAAATCAATCAAGATAAAGAAGATAACAATGCTCACTGTGAAGATATGAAAACTGATGTTAAATATTCCGCAAGTGACTTTGAAGAACCCGGAATTgatattgtagaaaataaagtttttgtaTCAGATTCAACATCACATACGGATTGGGATGTTTATAGTTCTGACAAAGACTCGGCTTTTGATACTAAGTTGTTTGTAAAATCAGAACCGAATTTAAAAGACAGTGGTCTACTTAACAAGGATACCGAAATATTAAGTGATTTTGCGTTAAATAAAGAGATTATCAAATCGGAAAGTGAAGGATTCAATGATAAAATGATTGGGTCATATCGGTGTAAAGtctgtaataaatgtttcaacaaTTCAGATATGTTGAGAAAACACCAGCGTGCTCATAGTACTGAGAAGGTAGAGAAACATAGCAAATTGCCTAAAACTATATGTGAGTCTTGTTACATGCAACTCGTCAAAACGCAGAATTTTCAAAGACAAGCTCTTCAATCTGAACAAACTCTGCAGTTGCATTTGGAACAATGGCAACAAGATGATAAACAAAACATACTTGGAAGTTCAGTAACACATCCAGGTATTAGTGGGAATAATTTTCTTGAAACTAACGTTGCTAAACAAGACAGGGAAGATGACAGTACCAACTGTGAAGAAATAAAGCCTGAAGTTAAATATTTCGAAAGCGGTTGTGAAGAATTTGAAATGGATAGTGTAGAAAAGAATACTGATCCATTAGAAACTAGATCACATACGAAATGGAATGTTCAGAGTTCTGGCAAAGACTCTGCTTTTAATCCTAACCTGATTGTAAAGTCTGAACCGATAATAAATGATAATGATCTGTTTGATATTGATACCGAAGTATTAAATGATTTCCCGCCGAGTCAGAACATTATAAAATCGGAGAACGATGTTTCCAACGATAAAATTATAGCatcatatcagtgtgacatctGTAAAAACTGTTTcaataatttagatattttgaGAAAACATCAGTGCTTAAAATATACTGGTGAGAAGGGATTTCAGTGTAACATTTGTACTAAGAATTTCAGCTGTTCAAAGAAACATATCAAATTGCCTACAAGTATATGTGAGCTTTGTTACATGCAACTTGTCAAAACGCAGAATTTTCAAAGACAAGCTCTCCAATCTGATAAAACCctgcagctatatctgaaacaACTGCCAGATGACAATAAGCAAAACATACTTGAAAATTCAGTAACACTTCCAGATATCAGCGGGAATCATTTTATTGACATCACTCTTGATAAACAAAACAAGGAAGATAACAGTACCATTTGTGAACAAATAAAGCCCGAAGTTAAATATTTCGAAAGTGGTTGTGAAGAATTTGAAATAGATATTGTAGAAAAGAAAATTGTTCCGTTAGAAACTAAGGTACACTCGGTTTGGGAAGCTCATAGTTCTGGCAAAGACTCGACATTTAATTGTAACCTGATTGTAAAATCTGAATCAAAAGTAAATGATAGTGATCGGTTTGACATTGATACCCAAGTATTAAATGAATTCCTGCCAAGTCAGAAGATTATAAAATCGGAGAACGAATTATCCAATGATAAAATGATCGCGTCCTATCAATGTGACGtctgtaataaatgtttcagtAATTCAGATAGTTTGAGAGAACATCAGTGTTTACATACGGGTGAAAAGAGatataaatgtgacgtttgtaacaaGAGTTTcaataaatcgtttattttgcGAATGCACGAGaggatacatactggtgagaaaccttacCCGTGCGACGTTTGCCATAAAGGTTTCAACAGTTCAGGTAATTTGAAATTACATCAACGTTCTCAcactggtgagaagccatatcagtgtgatgtctgtaataagagtttcagtCAAGTAGGTATTTTGACAAGACACCATCGtttacatactggcgagaagcCATATacatgtgacgtttgtaataagggTTTTGCTACAAATGGTGCTTTGGGTATACATCAGCGTTTACATACTGGAgagaagccatatcagtgtgaaTATTGTAATATGAGTTTTAGCGGCTCAGGTAATTTGAAATTACACCAGCGTTCTCATACTGGTGAAAAGCCTTATCAATGTGACATATGTAACAAGAGTTTTAGCCAGCCAGGTATCTTAGGAAGACACCAGCGtttacatactggtgagaagccctataaatgtgacgtttgtaataagcgtTTCACGACAAATGGCGCTTTGAGAACACACCAACGTTCTCATACCGGTgagaagccatatcagtgtgatgtttgtaataaaagtttcAGTCAACCAGTTATTTTGAAAAGACACCAGCGTTTACATACCGGTGAaaagccgtatcagtgtgacgtttgtaacaaGTGTTTTACGACAAATGGTGCTTTGAGAACACACCAACGTGTACATACCGGTGAaaagccatatcagtgtgatgtttgcaataaatgtttcaCCCGGGTGAGTAGTTTAAACAAACACATGCCTCTACACTCGTCAGATGTTTAA
Protein Sequence
MENILFHEKIISGMCRLCLSSNGTLIDMFSFSSELGSQIANAVTKCTSVHVVKHRELPSTICELCYIQLIRTQNFQIQALKSDRTFQIYLQRLHDDKSLLESAVIPPGTHGDSCIETNSTKQDKEDNNTNCEEVKPEVKYSVGSCEEPEMDIVENKVFASGSKSHTEWNDHSCNKDPAFNPNLIVEKHSELPSIICEHCYGQLIRTQNFQIKALKSDKTLRFYLQQLQSDDKQSLLGSSVILPDIDDNICVETSVADQNKEKNSINCKEIKPKLEDSESDYEEFKMNIAKNTVFTLDLKSHTEWDTHSSNKDSVFNPNLIVKAEPINDKDLCDDDTGILNDYSIKQKNIKSDNEDSDSQMISSYQCDVCKHCFSKPVTLKEHQRIEKDSELPTTICESCYMQLISTQNFQMQAHKSNTTLQLYLQRLQNDDKQKILESSFILSNVGGNSYVQTNVGNQDNVVHSTDIEEMKHDVKYFASGFEEYEVDIIEKKWDINDSEEGSTFNPNLILKAKPKTNEDEKEDHIDDVFSLNQKNIKSENEITSDKMIASYQCDVCKKYFNDLDILREHHLVHTVEKHSELPTTICESCYVQLIKTQTFQMQALKSDRTLQIYFQRLQNDDQSIPGSVAILPDIEGHCIQINQDKEDNNAHCEDMKTDVKYSASDFEEPGIDIVENKVFVSDSTSHTDWDVYSSDKDSAFDTKLFVKSEPNLKDSGLLNKDTEILSDFALNKEIIKSESEGFNDKMIGSYRCKVCNKCFNNSDMLRKHQRAHSTEKVEKHSKLPKTICESCYMQLVKTQNFQRQALQSEQTLQLHLEQWQQDDKQNILGSSVTHPGISGNNFLETNVAKQDREDDSTNCEEIKPEVKYFESGCEEFEMDSVEKNTDPLETRSHTKWNVQSSGKDSAFNPNLIVKSEPIINDNDLFDIDTEVLNDFPPSQNIIKSENDVSNDKIIASYQCDICKNCFNNLDILRKHQCLKYTGEKGFQCNICTKNFSCSKKHIKLPTSICELCYMQLVKTQNFQRQALQSDKTLQLYLKQLPDDNKQNILENSVTLPDISGNHFIDITLDKQNKEDNSTICEQIKPEVKYFESGCEEFEIDIVEKKIVPLETKVHSVWEAHSSGKDSTFNCNLIVKSESKVNDSDRFDIDTQVLNEFLPSQKIIKSENELSNDKMIASYQCDVCNKCFSNSDSLREHQCLHTGEKRYKCDVCNKSFNKSFILRMHERIHTGEKPYPCDVCHKGFNSSGNLKLHQRSHTGEKPYQCDVCNKSFSQVGILTRHHRLHTGEKPYTCDVCNKGFATNGALGIHQRLHTGEKPYQCEYCNMSFSGSGNLKLHQRSHTGEKPYQCDICNKSFSQPGILGRHQRLHTGEKPYKCDVCNKRFTTNGALRTHQRSHTGEKPYQCDVCNKSFSQPVILKRHQRLHTGEKPYQCDVCNKCFTTNGALRTHQRVHTGEKPYQCDVCNKCFTRVSSLNKHMPLHSSDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-