Vnig013775.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
nrf-6
Assembly
GCA_034508555.1
Location
JAVRKA010000041.1:799953-810434[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.029 0.8 10.8 2.0 1 20 905 924 905 927 0.93
2 13 7.9e-06 0.00022 22.1 0.4 1 23 933 955 933 955 0.98
3 13 1.2e-05 0.00033 21.5 0.9 1 23 961 983 961 983 0.99
4 13 0.00038 0.01 16.8 0.2 1 23 989 1011 989 1011 0.98
5 13 7.1e-06 0.0002 22.2 0.4 1 23 1017 1039 1017 1039 0.98
6 13 1.8e-05 0.00051 20.9 1.7 1 23 1045 1067 1045 1067 0.99
7 13 1.6e-05 0.00043 21.1 0.6 3 23 1075 1095 1073 1095 0.98
8 13 2.1e-07 5.9e-06 27.0 2.0 1 23 1101 1123 1101 1123 0.99
9 13 2.7e-06 7.4e-05 23.5 1.1 1 23 1129 1151 1129 1151 0.99
10 13 6e-07 1.7e-05 25.6 0.4 1 23 1157 1179 1157 1179 0.98
11 13 1.8e-05 0.0005 20.9 1.4 1 23 1185 1207 1185 1207 0.95
12 13 0.00017 0.0047 17.8 2.9 1 23 1213 1235 1213 1235 0.98
13 13 1.8e-05 0.00051 20.9 2.1 1 23 1241 1263 1241 1263 0.99

Sequence Information

Coding Sequence
atgaagTTCTATAAAAtcgttttatttgttttcgttCTGATTTTTACAACAAAACGCGGGAGTAGTGCCAAAGGATCAATAATATCTGACGAATTATTTCATAAACTAGCCAAATTTTATACGTTTAAttcaaataatgatattttggaTACAACATGCGCAAAACAAACGGCACAATACTTTTTAGCACTGACGGCGCAGCCTCCAAAAGCATGGGCTATCAAAATGTTCGACGCATCATCGAAAATGCAGTCGGGGATTATGGCTGGCAACTTAAGAGAACTGGGTGCGTTCGATCAATGTCTAAGCATTGATAAAATTGTCTCAGATAAAGTTACCATCAGCGGTAAACATTGCTACGGAACTTTGACCTTGCAGAAACCGGGATCTAAAAATGGAAGCAGTTTCAGTGAACAAGAAAAAGACGCCATCGCTCTAATAAATTTACTGGCTGGTCCTAATCAAaaaatgagaGTTGAAAATGAGATTGAAACGCGTGATGAACAAACAGGAGGCATGAATATAGGCCTTAAATGGTCGATTTGCGTTCCAGATGGATGCTCTGCAAAGCAAATCCAGCGATACgtacaaaatttattgtttggAAAAAACAGTCCAATAAAATTCAAGCTCAAAGAATCGAATTGTCAATCGGCAGAAACAATTAAACCGAAACTAAGAACTGGAGATTGGGTTTTTGTAGGATTTCtaattgttattttagtttttttggttTCGAGTACAgtttatgatatttatttacaactaaataaaaaacGAACGCTTCATCCGATCTTGTTAGCGTTTTCAGTTTTAACAAATGGTAAGCGTTTGATAGCGGTAAACAAGAGTCCCGAACAGCTGCCTTGTTTGCATGGAATGCGCTGGTTCAGCATGATGTGGGTACTCTTAGGACACAGATATATGGAAGCTTTAATGGAACCACTTGTTAATACTTTTAGTTTATTGAAGTGGCAAAAAAAATTCCTTAGTCAGCTCCAGCTCGGAAGTACTGTATCAGTCGACACATTTTTCATGCTTAGCGGATGCTTATTGATGTACGGATTCTTGAAAGCAATGACTAAAAAAATCCCTTTCAATATCCCGTTGTTTTATATACATCGATATCTTCGATTAACACCAGCTTTGGCAGTTCTTATAGCTTTTCAAGTAACAATTTTACGATATATGGGATCTGGTCCAAGATGGCCGACGACAGTACAATCTCAAACAGGATGTGAAGACGGCTGGTGGAAAACTCTTCTTtacattcaaaattattattcagaTTACGGACAAAAGGCGCCTTCCATGTGTGTAATGCAAGCATGGTATCTCTCAATTGACATGCAACTCTATTGGCTCTCACCGTTAGTCCTGCTTCcagtttggcattttaaacgcTTTGCTTGGCTGATAATGGCTGGGCTAGTCTGTATATTCACAGCAGTGCCCACAGTCATAGCATATCAGTATAAGCTGGACGGCTGGGGTATGGGCGGTGATGCAGATGTGTATTATATGAAAACTCATACTAGAGCAGGAACGTGGCTAGTGGGGATATGTCTTGGATATGTTCTATTTTACACCCGAGGAAAGAAAATATCTATGGATAAGcgAGTCTTGACTCTTTTGTGGATTATATCTACAGTCGTAGCGTTATACGTCTTATTTGGAATGTATCCTTCAACACAAGACGGTTACGTCTACAAACGCTGGTTCAGTACCATATTCGTGGGTTTCCATCGAGTTGTTTGGTGCTTAGTACTGTCCTGGATTATTTTTGCTTGTGTTCACGGATATGGAGGCCCTGTGAACTGGATTTTATCACTCCCCATGTTTCAAGTACTGGGACGATTCACTTACAGCATGTATTTGGCTCATATAACTTTACAACAAATGAGGGGCGGTGTTCTACGATCTCCAGGACACTTTTCGAATTTAGATATGTGGTATATCTTTTGGGGAGATTTAATATTCTGTTTGATAATAGCAGTCGTATGGGTGCTAGCCTTCGAGTCTCCTGTCGGTGTCATCGATAACGTATTATTAGGAGgagctaaaacaagaaaaacgcAAGCACCCAATGACAATTCACCAAAACAAACCGAAACTGCCGATGCACcaacaaatattataatttctaaaCAAACGATGGAGGACAATAATAACGAACTTACGGGAAAAAATATGTCTGCCAGTTCTTCCACTGCTAAAGAAGATTTATCAATCGATATGTCTTCTGGAAATGAAAATCTAGCTCTCGATGTAACAACTGAAAATCTACAATCGACAAACTCTCAACAAGACCCACCTCCGTACGAGATTACAGAAAACGACGGGTTACCATCTTTAATTTGTAAACCATGCTTCACAAAATTGGAGATGGTTAATGTATTTCGTACACAAGctgtaaattcagaaaaaactttactaGAATATTTACAAAAGTCTAAGGAAGTTGAAAGTTGCATGCTTGAACACAATTATTACAAACAATATGAAGAAACGGCTACTAAAAATGAAAACGAATGTGGAACCACCAAAGTAAATGTCGAATGTGAAATCCCATGTGATGAAACAAAACACGACGCAAACACCGAAAAACAAGAAGAATCATTTGACGAAAAACCGGAACTTAAAGCGGAAAACGATTCGTCTGAAGAAAAATACGCTGATCAAAACCAACTGAAATCCAGCGGTAAAAAACGCTATAATTGCGACGGTTGCGATAAAAGTTTTAGATGCACAGCTGAGCTAAAACGACACAGGTGGGTTCACACAGGCCAAAAACTATACGAATGTAGCGagtgtaaaaaaagtttttcacagCCGTCCTCAGTGGTCGCTCACAAACGTATCCATACCGGGGAGAAACCGTACGAATGCAACGTGTGCAAAAAACGGTTCAATCAAAGCGGGGCGCTTATTCTCCACAAAAGAACGCACAGTGACAAAAAATTGTACGAATGTGATTTTTGTAAGAAAGGTTTTATCCAATCAGCTGCCTACAATGCTCACGTGAGACTGCATACAGGGGAGAGACCTTTTCAGTGCGATGTGTGCGGAAAATCTTTTCCAAATACAAATAACTTGAATTCTCACAAACTGGTGCACAGCGGTATTAAGCGGTTTCAGTGTGATGAATGCGGGAAAAGTTTCAGTCAGTTGTTCGTCCTGAAAACGCACAAAAACACGCATTCGGGGGCGAAGCCCTATGGATGCGATATTTGTAATAAGAAATTCTCGGATGCAGGCACTTTACGAAAACACAAACGAGTTCACAGCGACGATAGGAAGTATCAGTGCGATATTTGTGGAAGAAGTTTCCGACAACTGTTCAACCTCAACCAGCACAGACGCACGCATACCGGCGAACGCCCGTATAAATGCAATACGTGTGACAAAGCGTTCTCTGAGTTGAGTACTTTGACCAAACACCAGATGATTCATTCCGGGttgaaaccgtatcagtgtaaTGTTTGTGAGAAAACTTTTTCGTCGGCAAGTAATTTGAAAGTGCATGAAATCACGCATACCGATAAAAAACCGTTCGCTTGCAATATCTGTGATAAGAGGTTCAATCGGTCGAGTGCTTTAAAAACGCATAAGTTTATTCATACAGGGGAAAAACCGtttcagtgtggcgtttgtggCAGATGTTTCGCTCTTCACGGAGATCTCACAAAACATTATCGATTACATACCGGTGAAAGACCGTATCAGTGCCATCTGTGTGAGAAAAGTTTCATTAGGATCGACCAACTTAAAATGCATATTATGAAGCATgaatag
Protein Sequence
MKFYKIVLFVFVLIFTTKRGSSAKGSIISDELFHKLAKFYTFNSNNDILDTTCAKQTAQYFLALTAQPPKAWAIKMFDASSKMQSGIMAGNLRELGAFDQCLSIDKIVSDKVTISGKHCYGTLTLQKPGSKNGSSFSEQEKDAIALINLLAGPNQKMRVENEIETRDEQTGGMNIGLKWSICVPDGCSAKQIQRYVQNLLFGKNSPIKFKLKESNCQSAETIKPKLRTGDWVFVGFLIVILVFLVSSTVYDIYLQLNKKRTLHPILLAFSVLTNGKRLIAVNKSPEQLPCLHGMRWFSMMWVLLGHRYMEALMEPLVNTFSLLKWQKKFLSQLQLGSTVSVDTFFMLSGCLLMYGFLKAMTKKIPFNIPLFYIHRYLRLTPALAVLIAFQVTILRYMGSGPRWPTTVQSQTGCEDGWWKTLLYIQNYYSDYGQKAPSMCVMQAWYLSIDMQLYWLSPLVLLPVWHFKRFAWLIMAGLVCIFTAVPTVIAYQYKLDGWGMGGDADVYYMKTHTRAGTWLVGICLGYVLFYTRGKKISMDKRVLTLLWIISTVVALYVLFGMYPSTQDGYVYKRWFSTIFVGFHRVVWCLVLSWIIFACVHGYGGPVNWILSLPMFQVLGRFTYSMYLAHITLQQMRGGVLRSPGHFSNLDMWYIFWGDLIFCLIIAVVWVLAFESPVGVIDNVLLGGAKTRKTQAPNDNSPKQTETADAPTNIIISKQTMEDNNNELTGKNMSASSSTAKEDLSIDMSSGNENLALDVTTENLQSTNSQQDPPPYEITENDGLPSLICKPCFTKLEMVNVFRTQAVNSEKTLLEYLQKSKEVESCMLEHNYYKQYEETATKNENECGTTKVNVECEIPCDETKHDANTEKQEESFDEKPELKAENDSSEEKYADQNQLKSSGKKRYNCDGCDKSFRCTAELKRHRWVHTGQKLYECSECKKSFSQPSSVVAHKRIHTGEKPYECNVCKKRFNQSGALILHKRTHSDKKLYECDFCKKGFIQSAAYNAHVRLHTGERPFQCDVCGKSFPNTNNLNSHKLVHSGIKRFQCDECGKSFSQLFVLKTHKNTHSGAKPYGCDICNKKFSDAGTLRKHKRVHSDDRKYQCDICGRSFRQLFNLNQHRRTHTGERPYKCNTCDKAFSELSTLTKHQMIHSGLKPYQCNVCEKTFSSASNLKVHEITHTDKKPFACNICDKRFNRSSALKTHKFIHTGEKPFQCGVCGRCFALHGDLTKHYRLHTGERPYQCHLCEKSFIRIDQLKMHIMKHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-