Vnig000559.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
-
Assembly
GCA_034508555.1
Location
JAVRKA010000001.1:16024075-16034845[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00064 0.018 16.0 1.3 2 23 153 174 152 174 0.98
2 16 0.0045 0.12 13.4 2.9 3 23 182 203 181 203 0.94
3 16 0.00013 0.0036 18.2 3.2 1 23 215 237 215 237 0.96
4 16 1.3e-05 0.00037 21.3 1.0 1 23 299 321 299 321 0.98
5 16 0.0013 0.036 15.1 6.1 3 23 329 349 328 349 0.97
6 16 0.00027 0.0073 17.3 2.8 2 23 371 393 370 393 0.96
7 16 9.8e-05 0.0027 18.6 4.7 1 23 461 483 461 483 0.97
8 16 0.11 3 9.0 2.0 1 23 489 512 489 512 0.94
9 16 1.1e-05 0.0003 21.6 0.7 1 23 517 539 517 539 0.98
10 16 5.2e-05 0.0014 19.5 3.2 1 23 547 569 547 569 0.97
11 16 2.5e-06 6.9e-05 23.6 1.9 1 23 576 598 576 598 0.97
12 16 5.6e-06 0.00015 22.5 1.6 3 23 610 630 608 630 0.96
13 16 0.0004 0.011 16.7 3.5 1 23 636 658 636 658 0.99
14 16 2.9e-05 0.0008 20.3 1.5 1 23 664 686 664 686 0.96
15 16 8.9e-07 2.4e-05 25.0 0.3 1 23 692 714 692 714 0.99
16 16 0.00061 0.017 16.1 0.1 1 23 720 744 720 744 0.92

Sequence Information

Coding Sequence
ATGGACGACTCCGAGAAAAGTCCAGCCGTCGTTTCAGACAAAGTTTGCCGTTCCTGTATGAGCGTAGGAACGGACATGAAATCTGTTTTCAGCCAAGCAGAAATGGCGGGGCACGAAGCCCAACTAGCCGAGATGCTTATGGCATGTGCTTCGGTTCAGGTTGTATCGGGCGACGGTTTGCCAGGAGTCATATGCGAACCGTGTGTACATCAGCTGAGCAGCGCTTATTCATTTAAGCAACAATGTGAAAACACAGACACCAAGCTTCGACAGCTACTGccaaaaattaaacaagaaGATAAAGACTCGGATTCTCTGAATATTGTCGTCAAACCCGACATCGACGTGATGGCAGAAGATTTTATGTATCCGGACACGCAGTTCGACGACTATTCAGACTCGGGCGATGAATCGAAGCGCATGAAGCCGACAAAGAATTCGAAAATTTCAGCAAACCAATGCAAGTACTGTCTGAAAAAATTGGCTTCGAAAGAAGGATTGAAAATACACATGCGAAAACATACGGGGGAAAATTTGAGGCACTGTCTGGTGTGTAATGCTGGATTTACGAAAACTAGTCACTTAACTAGACACATGCAGGAGGTTCATTCCAAAATTAAATcagaaaccacatctaaaactCACGTGTGCAATTTGTGTGGCGAGGGATTCACAAGAGCTTATCATTTGTCGAAACATAAAAAGGAACATCGTGAAAAAGACGAATCAGTCGGTGATGGTATCAAAACCGAAACGCCGGAAAACAATGACGAAATTGACCTGAACGATAGTATGGCTGcagATAATATAATGAACGACGATTCTGACAATAGTGCCGGAGATCCGAGCTATGCAACTCAGAAAAGAAAGTCGAAAAAGTCAACCGGAGAAGAATATCCGTGCAAGGTATGTCACAAAGTTTTGACAACGTCGACCGGACTTGAAATTCATATGCGTCGACATACTGGTCTCGATCTGTCTGCGTGTCATATATGTAGTAAGACATTCACAAAAACAAACCATTTGAATCGGCACCTGACGTCACACGGTATAACAGCTGAGCGAGTGTTCAAGGAGCGGAAGTCGGAGTGCAAGTCCAAGGTCAGCATGCCGTGCGAATACTGCGATCGGAAATTCGTCTACCGCAAGAGTTTTCAGCACCATCTGAAAACGGAACACGGAATAAGTGACGACGAATCGTCGCTCACCAACTTCATCAAGACCGAAGAACAACCCATCCAGCCGAAAGTAGAAGAAGGCGAAGTTCCGGCAGACTTACAGAGTGAAATTCAAAGACTTACCGAGGGTGTGGGCTTGGAAGATGAGGAAGACGAAGTAGATCAGGAAGGTTTCGATATGAACGATAAGAAAGCAAAAGTATACGAGTGTCACGTCTGTCAATATAAATTCGATAGAGCTAATCATTTGACGCGTCACATGACTCTGCATCGGGCGATTCTAACGCACAAATGCGAGCGGTGTGAAAAGGCGTTCCTGACAGAAGAACACCTTGCACAGCATGTAcagGAATATCATATCGATAGACCATATGTCTGTACTACTTGTGATAAACCGTTTGTAAGAGGAGAACACTTAATTAGACATTTGAAAGTTCACGAAAAAAAAGATGAAAGTGAACATAAATGTTCTATTTGTACCAAAGTATTTCAAAGAGCGGATCATTTGGCGCGGCATGTGAAATTACATTTATTACAAGATAAACGTCACATATGTACCGTCTGTAACAAGGCCTTTAACAGATTAGATAATCTACGAACTCACCAACGCATCCATTCTGGTCAGAGGGATCCCGTTCGTCTGCATCTGTGCGTCTATTGTGGAAAGGAATTCAACAATTCCAGCAACATGATCGTTCACATGCGAAGACATACCGGAGAGAGACCATATAAATGCGCCGAATGTGGAAAAGGATTTCCGCGTTCGCACGATCTCAAGTGTCACGAGAGAACTCATTCGGGCGAGCGACCCTACCTGTGTACGCTGTGCGGAAAGTCTTTCAATAAGAGCAACAAATTGGTCCGTCATACGAGAGTCCATACAGGAGAGCGCCCATATGTATGTTCACTCTGCGGCCGCGCGTTCACTCAGTCGAACGACTTGGCCCTGCACATGAGACGGCACACGGGCTCGAGGCCTTACGCGTGCGGCGTTTGCCCGGCCAGATTCATCCAGTCCGGTCAGCTGAAGGCCCATCGTCGGTCGCAGGGACATTGGGTCGAACAGGAACAGCAGTTCCGCGGCAACAGAGTGGAACCCGTCCATATAGAAGGCTTTGTCGAAACGCCGATCAAGCACAGGAACCGCgtgagtaaaataaaaatcgaacAGCTGTTGCCGCTGACGACGTCGAGCATAGCTTCGAGCATAGCGTCCGGCTTAGTCACGAGCATAGCGGCGAACATTGCGTCCGAATCGACAAACAATTCTACGGTTTCGGCGTTTCTGTCTCCGACGACGGAGAACGACAGCGGCGTCACGATCACGCCGCTGCGCAACACGGAACCGAATACGACGAGTGCGTTCGTTCCGACGACTTCGTACCAAAATAGTATAGCTACCGCGTCGAATTCCTTTTCGGACAATGAGAATTTCAGTTTTCAGCAGTACGGGTAG
Protein Sequence
MDDSEKSPAVVSDKVCRSCMSVGTDMKSVFSQAEMAGHEAQLAEMLMACASVQVVSGDGLPGVICEPCVHQLSSAYSFKQQCENTDTKLRQLLPKIKQEDKDSDSLNIVVKPDIDVMAEDFMYPDTQFDDYSDSGDESKRMKPTKNSKISANQCKYCLKKLASKEGLKIHMRKHTGENLRHCLVCNAGFTKTSHLTRHMQEVHSKIKSETTSKTHVCNLCGEGFTRAYHLSKHKKEHREKDESVGDGIKTETPENNDEIDLNDSMAADNIMNDDSDNSAGDPSYATQKRKSKKSTGEEYPCKVCHKVLTTSTGLEIHMRRHTGLDLSACHICSKTFTKTNHLNRHLTSHGITAERVFKERKSECKSKVSMPCEYCDRKFVYRKSFQHHLKTEHGISDDESSLTNFIKTEEQPIQPKVEEGEVPADLQSEIQRLTEGVGLEDEEDEVDQEGFDMNDKKAKVYECHVCQYKFDRANHLTRHMTLHRAILTHKCERCEKAFLTEEHLAQHVQEYHIDRPYVCTTCDKPFVRGEHLIRHLKVHEKKDESEHKCSICTKVFQRADHLARHVKLHLLQDKRHICTVCNKAFNRLDNLRTHQRIHSGQRDPVRLHLCVYCGKEFNNSSNMIVHMRRHTGERPYKCAECGKGFPRSHDLKCHERTHSGERPYLCTLCGKSFNKSNKLVRHTRVHTGERPYVCSLCGRAFTQSNDLALHMRRHTGSRPYACGVCPARFIQSGQLKAHRRSQGHWVEQEQQFRGNRVEPVHIEGFVETPIKHRNRVSKIKIEQLLPLTTSSIASSIASGLVTSIAANIASESTNNSTVSAFLSPTTENDSGVTITPLRNTEPNTTSAFVPTTSYQNSIATASNSFSDNENFSFQQYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01530558;
90% Identity
iTF_01530558;
80% Identity
-