Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000012.1:643041-644744[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.3e-05 0.0009 20.1 1.7 1 23 181 203 181 203 0.98

2 14 0.0019 0.053 14.6 3.7 1 23 209 231 209 231 0.98

3 14 9.2e-06 0.00025 21.8 2.1 1 23 237 259 237 259 0.98

4 14 4.5e-05 0.0013 19.7 2.6 1 23 265 287 265 287 0.98

5 14 1.7e-05 0.00048 21.0 2.1 1 23 293 315 293 315 0.99

6 14 3.8e-05 0.001 19.9 2.7 1 23 321 343 321 343 0.98

7 14 5.8e-06 0.00016 22.5 6.0 1 23 349 371 349 371 0.98

8 14 1.1e-05 0.00031 21.6 4.9 1 23 377 399 377 399 0.99

9 14 7.1e-06 0.0002 22.2 2.8 1 23 405 427 405 427 0.98

10 14 1.1e-05 0.0003 21.6 2.0 1 23 433 455 433 455 0.99

11 14 2.2e-05 0.0006 20.7 4.1 1 23 460 482 460 482 0.99

12 14 4.1e-06 0.00011 22.9 3.4 1 23 488 510 488 510 0.98

13 14 2.7e-06 7.6e-05 23.5 0.9 1 23 516 538 516 538 0.98

14 14 1.4e-05 0.00038 21.3 4.0 1 23 544 566 544 566 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.3e-05	0.0009	20.1	1.7	1	23	181	203	181	203	0.98
2	14	0.0019	0.053	14.6	3.7	1	23	209	231	209	231	0.98
3	14	9.2e-06	0.00025	21.8	2.1	1	23	237	259	237	259	0.98
4	14	4.5e-05	0.0013	19.7	2.6	1	23	265	287	265	287	0.98
5	14	1.7e-05	0.00048	21.0	2.1	1	23	293	315	293	315	0.99
6	14	3.8e-05	0.001	19.9	2.7	1	23	321	343	321	343	0.98
7	14	5.8e-06	0.00016	22.5	6.0	1	23	349	371	349	371	0.98
8	14	1.1e-05	0.00031	21.6	4.9	1	23	377	399	377	399	0.99
9	14	7.1e-06	0.0002	22.2	2.8	1	23	405	427	405	427	0.98
10	14	1.1e-05	0.0003	21.6	2.0	1	23	433	455	433	455	0.99
11	14	2.2e-05	0.0006	20.7	4.1	1	23	460	482	460	482	0.99
12	14	4.1e-06	0.00011	22.9	3.4	1	23	488	510	488	510	0.98
13	14	2.7e-06	7.6e-05	23.5	0.9	1	23	516	538	516	538	0.98
14	14	1.4e-05	0.00038	21.3	4.0	1	23	544	566	544	566	0.98

Sequence Information

Coding Sequence: ATGTCTGACAAAACACTGCCAAGTTCTCAGAAATTAAACTTTTCTGGCAAACAGACCACGTTTGAGCGTTCTAGCGAGAGATCTTCTGAAGACACTTTCCATAACACTAATGAGCGTATTACTGTGAAATGCGAATCTTTGGAACATGAAGGCATGATTGATATGGATGCTAGTGTGGAAGAAAAGTTGTCGATGAATATTAAGGCGGAAAACAAAAtggaaaatgaaatatttttaaaatccgaaatcaaagACGAACTGATGGATGATAATTCAATCTTACCAGATGGTTATCCTGATGCTGGTGAAATCGAATGTGAAGATTCTAAGATCGATACTAGTGACACTAAAGTGGCTTTGGAAGTAGATAAAAACAGGAAAGAAAAAATATCTGTAACTTTTAATTCAGCAAGCAAAATTAGTGGACACATGATCTTAAAAACTGAAATCAAGAATGAACCGGTGGATGATAATTCACTACTTTCACCAGAATACCCATTATACGCGCCCTCTACGATTTTACATTCTGGTCAGAAATCATATCAGTGTAacgcttgtaaaaaaatttttaatacatcGTCATCTTTGAAGAGTCACAATCGcgtacatactggcgagaagcCATATCATTGTACCGTTTGCAAAAAGCGTTATAATGCATCATCATCTTTAAAAAGTCACAGTCGCGTGCATACCGGTGAGAAGCTATATCAGTGTGATGTCTGTAAAAAGCGTTTTAATACATCATCAGTTTTAAAAAGACATAATCGCATACATACTGGGGAGAAACCACatcagtgtgatgtttgtaaaaagTCCTTTACGGAATCTTCAAAGCTAACGATACACAATcgtgtacatactggtgagaaggcatatcaatgtgatgtttgtaaaaagtgctttGCTTCATTAGCAACTTTGACGGTACACAATCGCACTCATAcaggtgagaaaccgtatcagtgtgatgtttgtaaaaagtgttttactgCACTGTCAGATTTAAAGCAGCATAATCGtgttcatactggtgagaaaccgtatcggtgtgatatttgtaaaaagtgctttTCTCGATCAGGACATTTGCAGACTCACAGTCGCGTACATACCGGCGAGAAACCATATAAGTGTCTcatttgtaaaatgtgcttttctACGTCATCTGATCTAAAGAGACACAGTCGCtctcatactggtgagaaaccgtatcggTGCGATATTTGTGAAAAGTGCTTTACAGCATCGTCAGATTTAAAGAAACACAATCGAgttcatactggtgaaaaaccgtatcagtgtgacggtTGTGAAAAGTGCTTTTCTACATTAGGATATTTAAAGGAACACAGTCGCGTTCATACTGGCGAGAAGTATCAGTGTAATAGTTGTAACAAGTGCTTTTCTcaactaaataatttaaaaatacacagTCGCGTGCATACTGGCGAGAGACCTTATCAATGTGACTTTTGTAAAAAGCGTTTTTCTAGATCAACAACTTTAAAGAAACATATTAGCGTTCATACTGATGACAAACCCtatcaatgtgatatttgtaaaaaaggTTTTTCAAGATCAGAATATTTAAGGGTGCACAATCGCATTCacactggtgaaaaaccatttcAATGTGACgtctgtaaaaagtgtttccgTCGATCAAACACTTTAAAAGTTCACTTGGTAACACActcatga
Protein Sequence: MSDKTLPSSQKLNFSGKQTTFERSSERSSEDTFHNTNERITVKCESLEHEGMIDMDASVEEKLSMNIKAENKMENEIFLKSEIKDELMDDNSILPDGYPDAGEIECEDSKIDTSDTKVALEVDKNRKEKISVTFNSASKISGHMILKTEIKNEPVDDNSLLSPEYPLYAPSTILHSGQKSYQCNACKKIFNTSSSLKSHNRVHTGEKPYHCTVCKKRYNASSSLKSHSRVHTGEKLYQCDVCKKRFNTSSVLKRHNRIHTGEKPHQCDVCKKSFTESSKLTIHNRVHTGEKAYQCDVCKKCFASLATLTVHNRTHTGEKPYQCDVCKKCFTALSDLKQHNRVHTGEKPYRCDICKKCFSRSGHLQTHSRVHTGEKPYKCLICKMCFSTSSDLKRHSRSHTGEKPYRCDICEKCFTASSDLKKHNRVHTGEKPYQCDGCEKCFSTLGYLKEHSRVHTGEKYQCNSCNKCFSQLNNLKIHSRVHTGERPYQCDFCKKRFSRSTTLKKHISVHTDDKPYQCDICKKGFSRSEYLRVHNRIHTGEKPFQCDVCKKCFRRSNTLKVHLVTHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -