Vnig009098.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- ZFY
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000021.1:2614971-2625830[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00018 0.005 17.8 2.7 2 23 160 181 159 181 0.97 2 23 1.4e-05 0.00038 21.3 0.7 3 23 191 211 189 211 0.97 3 23 0.11 3.1 9.0 3.1 1 23 217 239 217 240 0.95 4 23 0.0047 0.13 13.3 1.1 2 23 246 267 245 267 0.97 5 23 0.00048 0.013 16.5 1.9 1 23 271 293 271 293 0.98 6 23 1.6e-05 0.00044 21.1 4.9 1 23 298 321 298 321 0.97 7 23 7.1 2e+02 3.3 2.8 1 23 329 348 329 348 0.72 8 23 9.1e-05 0.0025 18.7 2.4 1 23 354 376 354 376 0.97 9 23 0.038 1 10.5 0.4 3 23 387 407 386 407 0.98 10 23 9.5e-06 0.00026 21.8 1.5 1 23 413 435 413 435 0.99 11 23 0.062 1.7 9.8 8.7 1 23 441 463 441 463 0.97 12 23 1.3e-05 0.00035 21.4 1.7 1 21 469 489 469 490 0.94 13 23 0.0043 0.12 13.4 1.1 2 23 614 635 613 635 0.97 14 23 0.00012 0.0032 18.4 2.2 2 23 644 665 643 665 0.97 15 23 0.043 1.2 10.3 0.4 1 23 671 694 671 694 0.97 16 23 0.018 0.49 11.5 0.3 2 23 700 721 699 721 0.98 17 23 0.0011 0.03 15.3 1.3 1 23 725 747 725 747 0.98 18 23 0.00013 0.0035 18.2 3.9 1 23 752 775 752 775 0.97 19 23 0.053 1.5 10.0 2.2 1 23 809 831 809 831 0.98 20 23 0.0022 0.06 14.4 1.1 3 23 842 862 841 862 0.99 21 23 0.0001 0.0029 18.5 1.0 1 23 868 890 868 890 0.98 22 23 0.00045 0.012 16.5 3.0 1 23 896 918 896 918 0.98 23 23 3.6e-06 9.9e-05 23.1 1.4 1 23 924 946 924 946 0.97
Sequence Information
- Coding Sequence
- ATGTGTCGACGACTGCTTCTTCATCTTTTATGCAAGATAAGTGAAGCCGACGGTTTACCATCAAAAATTTGTACTAAGTGCATAAAAGACGTGAAAATCTCGTACAACTTCAAGAATCAAGTCGAAAAATGTGATAATTTATTACGCAAAATCGTCCAAGACGAAATCAAATCGGAAGAAGAACAACTCGAGAGCATCGATTTAAAATCGGAGATCGATACCGATTGTACTTTGCAAGGAATCAACGATGACGCTTTTAAAGACGAGTTTTCCGCAAACACCGAAAACAAATCAATTTCGGAAACCGACGATTTCAATACAGGCGATGCCGACTTCCACGACAACGAAGACAGTTCCGCCGAAAGCTCCGACGAATTTACTCCACCGAAAGACGTCAAAAATTCAGACAACTCCGATACTAAAAATGCCAAATACGAAGACGACGACGGATTTGCGCAATTATACAAAAACGAGTGGAAATGCGAAGTGTGCGGCAAACAACTATGCAACAAAAATTCGATGGAGCGGCACATGAAGACGCATCCAAACTATCGGACCGAGTTCGTAAACTGCAGCATTTGCGGGAAACAGTTTTACGATAAGAAGTACTTAGAATCGCACATGTTGAGGCATACGAAAAACACGAAATACAATTGCGAGCATTGCGAGAAAGGTTTTTATGCGCTGACGCCGTTAGCTCATCACATCGAAAGACATCACTACTTCGAGCCGGTCGAGTGCAAAGAATGCAAGAAAAAATTCACTCTGCAACTCCAGCTCGACATACATTCGAGAACGCATCGGAAAGAATACATCTGCAATATTTGCGGCAAGCAGGCGAAGTCTTTGAAGGCTCTGTGCTCTCATCGAAGGACACACAACACCGACCTGTTTCCTTGTACGAAATGCGATCGGAAATTCAAATACAAATCGAATCTTCACGAGCATATGAAAAGTTCGCATATGGGTATAAAAAAAGGCAGACACGTTTGCAACATTTGCGGCAATGAGGTGGTCAATCTTAAACATCACATGATTCGACATGCTACAGAAAAACCCTTCAAATGTGAACACTGTGGCAAAACGTTTGCAAAAGAATGGGCCCTGAAACAGCATAACAAAAACCATACgggatttttggaaaaatatagaGTGCTGTGCACGGTCTGCGGGAAAAAGATTTTGAACAGTACGGCGTTACGCTATCACATGCGAATACATACAGgagAGGAACCATACAAATGCTCTGTGTGCGACAAGACTTTTAGAACAAACGGTACAATGCTGGCCCACAAACGAAGTCATACCGGCGAAAGATTGCACGAATGCACTGTTTGTCATAAAGATTTCGCTACAAAACACTGCCTTAAACTTCATAAACTTATCCATACTGGTGAACGACCTCATAAATGTAATTTCTGCGGTCGAAGATTCACGCAAAAATCGGCTCTGAAAACTCATATCGACACACGCGACGATCTACCAAAACAGATCTGTTCCAAATGTATTAAAGAAGTAAAAACGTCCtaccattttaaattaaaatcagaaaaatccGAGGAGCTGTTACATAAATACATGCAAGACAATGAGAAACAATTGAACAACTCTTCGCTtgtttctgtaataaaaacagAAGACGATCAATCGGAAGAAACGGCAGAAAACGAAACAATAAAGTTGACTCCACAAAACAACGAAGACTTTGACGACGCcgacagtttaaaaaattcatcgagAGAGACGTCGCCCGACGGGCGCTGCGCAGGGCCCGTCAACGAGCCGAACGCCTccggtaaattaaaaaaagaaattaaacgaAGCGAAGCCACCAGTTGGAAATGCGAAATCTGTGCTAAAGAATTATACAACAAGCATTCCGTTCAGCGTCACATGATCACGCATCCAGAATATCGGACGGATCCCGTTCAGTGTTCCGTCTGCAAGAAGCAATTCTTTGACAAGCAATATTTAACGAAACACATGCTGCGTCACAAGGGCGAAAAGCGTTACTCGTGCGAATTTTGCGACCGCGGTTTTTACGAGCTGACGCCGTTAGCGAATCACGTCAAGAAAAGTCACGACGTCAAGCCGGTTCAGTGCAGCGTTTGTCAGAAAGAGTTGACGCTCCAACTTCAACTCGATTTGCATATGAGAACGCACAGAGACGAATATATCTGCAATGTTTGCGGCAAGCAAGCGACGTCACTGAAGGCGCTCTGCTCGCACAGACGGATGCACAATACAAATCCGTTTCCGTGCACGCAATGCGACAGaagatttaaatataaatatagtcTTCATGTTCACATAAAGAGCTCTCATATGggcatcaaaaagaaaaaagacgtTTGCAATCTGTGTGGCTTCGAAGTACTGAATCTCAACAATCACATGTTGCGCAGACATGCGACAGAGAAGCCCCATAAATGTGATCGTTGCGAGCAAGCGTTCGCTAAAAAATGGATACTCAAACAGCACCAGAAAATGCATACGGATGAACCCAGACAACAGAAAGAATTGTGTACGATATGCGGCAAGAAGTTGATGAATTACACAAAGTTGCGCTATCATATGCGAATTCATACAGGTGAGAAACCTTACGACTGTTCGTTTTGCGAAAAAGCGTTCAAGACAAAAAGCGCGATGATGGTTCATAAAAGGGTTCATACAGGCGAAAGAAGATACGAGTGTACGTATTGTCAAAAACGATTTACGGCAAGTCGATGTCTCAAGGATCATATCTTAATTCATACGGGGGAGAGGCCACACGTCTGTAGCCTTTGTGGACGGGCATTCACGCAGAGGACAGCTCTGAAAACTCACATGAAAATCCACTGA
- Protein Sequence
- MCRRLLLHLLCKISEADGLPSKICTKCIKDVKISYNFKNQVEKCDNLLRKIVQDEIKSEEEQLESIDLKSEIDTDCTLQGINDDAFKDEFSANTENKSISETDDFNTGDADFHDNEDSSAESSDEFTPPKDVKNSDNSDTKNAKYEDDDGFAQLYKNEWKCEVCGKQLCNKNSMERHMKTHPNYRTEFVNCSICGKQFYDKKYLESHMLRHTKNTKYNCEHCEKGFYALTPLAHHIERHHYFEPVECKECKKKFTLQLQLDIHSRTHRKEYICNICGKQAKSLKALCSHRRTHNTDLFPCTKCDRKFKYKSNLHEHMKSSHMGIKKGRHVCNICGNEVVNLKHHMIRHATEKPFKCEHCGKTFAKEWALKQHNKNHTGFLEKYRVLCTVCGKKILNSTALRYHMRIHTGEEPYKCSVCDKTFRTNGTMLAHKRSHTGERLHECTVCHKDFATKHCLKLHKLIHTGERPHKCNFCGRRFTQKSALKTHIDTRDDLPKQICSKCIKEVKTSYHFKLKSEKSEELLHKYMQDNEKQLNNSSLVSVIKTEDDQSEETAENETIKLTPQNNEDFDDADSLKNSSRETSPDGRCAGPVNEPNASGKLKKEIKRSEATSWKCEICAKELYNKHSVQRHMITHPEYRTDPVQCSVCKKQFFDKQYLTKHMLRHKGEKRYSCEFCDRGFYELTPLANHVKKSHDVKPVQCSVCQKELTLQLQLDLHMRTHRDEYICNVCGKQATSLKALCSHRRMHNTNPFPCTQCDRRFKYKYSLHVHIKSSHMGIKKKKDVCNLCGFEVLNLNNHMLRRHATEKPHKCDRCEQAFAKKWILKQHQKMHTDEPRQQKELCTICGKKLMNYTKLRYHMRIHTGEKPYDCSFCEKAFKTKSAMMVHKRVHTGERRYECTYCQKRFTASRCLKDHILIHTGERPHVCSLCGRAFTQRTALKTHMKIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -