Vnig006045.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000012.1:1600034-1601605[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.7e-05 0.00047 21.0 2.0 1 23 161 183 161 183 0.98 2 13 5.8e-05 0.0016 19.3 4.8 1 23 188 210 188 210 0.99 3 13 3.7e-07 1e-05 26.2 2.9 1 23 216 238 216 238 0.99 4 13 5.9e-07 1.6e-05 25.6 3.8 1 23 244 266 244 266 0.99 5 13 1.8e-05 0.00049 21.0 3.9 1 23 272 294 272 294 0.99 6 13 4.4e-06 0.00012 22.9 5.3 1 23 300 322 300 322 0.99 7 13 8.4e-06 0.00023 22.0 5.3 1 23 328 350 328 350 0.99 8 13 5.9e-08 1.6e-06 28.8 3.7 1 23 356 378 356 378 0.99 9 13 4.5e-05 0.0012 19.7 6.2 1 23 384 406 384 406 0.98 10 13 1.6e-06 4.4e-05 24.3 2.1 1 23 412 434 412 434 0.99 11 13 1.5e-07 4.1e-06 27.5 0.9 1 23 440 462 440 462 0.99 12 13 0.002 0.055 14.5 9.2 1 23 468 490 468 490 0.99 13 13 4.4e-05 0.0012 19.7 8.9 1 23 496 518 496 518 0.98
Sequence Information
- Coding Sequence
- ATGGCGCGTATAAACAATAAAGCGAACAAATTTATCGAAGAAATGCCTTTAAAATTGGAAATCAAAGATGAACCAACGGATGATTATTCATCAAATCTAACAGAATGTACATATGTCAAAGGAGAACCTTTATCCAAGGAGAATGATAGTGGAATCACGTGCGAAGATGATATTAGCTACTACACAAAATTGAGAGAAGACACGTGTATTGTGAAAGAGGAAAATTTGTCAGCGAACAAGCTCAACCcggaaatttctttaaaatctgaAATCAAAGACGAACCAATTGATGAAGGTTCAGTAAATCTAACAGAATATGCTGATgatacaatagaaaatatatcaAAGAGTGATGATAACGAAACATACTGCGAAAATTTTAAGATCGATAGTGGTCACATATCGGGGAATAGGCTAgagaatacaaaaaatatttcgataaattctgagaaacataaaaaatcaaatgaagaTGAGACATATTACTGTGACATTTGTTTTAAGACGTTTACCAAATCTGTTACTTGGAAAACTCACATGCGTATACATGgggagaaaccatatcaatgcgACGTTTGCAGTAAGTGCTTCTCCGTATCAAGAAAGTTAAATAGTCACAAAcgaacacatactggtgagacgCCATATCAATgcgatgtttgtaataaaagcttCTCCGTATCAAGTCATTTAATTAATCACAAACGCacgcatactggtgagaaaccatatcagtgcgacgtttgtaataagtgcttCTCCGTATCAAGTCAATTAATTAAACACAAACGCacccatactggtgagaaaccatacaagtgcgacatttgtaataagtgtttctccGAATCAAGAAATGTAATTAATCACAAACGCacgcatactggtgagaaaccatatcagtgcgaCGTTTGCAATAAGTGCTTCTCCGTATCAAGTCATTTAATTAATCACAAACGctcacatactggtgagaaaccataccagtgcgACATTTGTAACAAGTGTTTCTCCGTATCAGGTCACTTAAGTAGTCACAAACGCACACATagtggtgagaaaccataccaatGCGACATTTGCAAtagatgttttaataaatcaagcaatttaaatattcacatGCGTACGCATACTGATGACAAACCatttcagtgtgacgtttgtaataagtgtttcaagcATTCAAACAGTTTAAATGTTCATAAACTCACACATACTattgagaaaccatatcaatgtgaaaTATGTAAAAAGAGTTTCAGGCATCCAGAAGGCTTAAAGATTCACAATCGTACGcacactggtgagaaaccataccaatGCGACATTTGCGAGAAAAGCTTCTCCGTGTCAAGTAATTTAATTAGtcacaaacgcacacatacCGGTGAAAAACCTTTccaatgtgacgtttgtcaTAAGTGTTTCAGCCATTTAAACCGTTTAAATCTTCACAAACGCacgcatactggtgagaaaccacaccagtgtgatgtttgtaataagtgtttcaccCAAACACACAATTTGAATCGACACAAACGCATACATACTGACGGGGAACAATAG
- Protein Sequence
- MARINNKANKFIEEMPLKLEIKDEPTDDYSSNLTECTYVKGEPLSKENDSGITCEDDISYYTKLREDTCIVKEENLSANKLNPEISLKSEIKDEPIDEGSVNLTEYADDTIENISKSDDNETYCENFKIDSGHISGNRLENTKNISINSEKHKKSNEDETYYCDICFKTFTKSVTWKTHMRIHGEKPYQCDVCSKCFSVSRKLNSHKRTHTGETPYQCDVCNKSFSVSSHLINHKRTHTGEKPYQCDVCNKCFSVSSQLIKHKRTHTGEKPYKCDICNKCFSESRNVINHKRTHTGEKPYQCDVCNKCFSVSSHLINHKRSHTGEKPYQCDICNKCFSVSGHLSSHKRTHSGEKPYQCDICNRCFNKSSNLNIHMRTHTDDKPFQCDVCNKCFKHSNSLNVHKLTHTIEKPYQCEICKKSFRHPEGLKIHNRTHTGEKPYQCDICEKSFSVSSNLISHKRTHTGEKPFQCDVCHKCFSHLNRLNLHKRTHTGEKPHQCDVCNKCFTQTHNLNRHKRIHTDGEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -