Vnig007575.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
-
Assembly
GCA_034508555.1
Location
JAVRKA010000016.1:6232349-6238998[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1.1e-06 2.9e-05 24.8 3.4 1 23 325 347 325 347 0.99
2 18 3.4e-05 0.00094 20.1 0.8 1 23 353 375 353 375 0.98
3 18 0.00025 0.0069 17.3 5.0 1 23 381 403 381 403 0.97
4 18 6.9e-05 0.0019 19.1 5.1 1 23 409 431 409 431 0.99
5 18 8e-05 0.0022 18.9 4.6 1 23 437 459 437 459 0.98
6 18 0.00012 0.0034 18.3 0.6 1 23 465 487 465 487 0.99
7 18 0.00059 0.016 16.2 5.4 1 23 493 515 493 515 0.98
8 18 0.0035 0.098 13.7 3.8 1 23 521 543 521 543 0.96
9 18 2.6e-05 0.00073 20.4 1.5 1 23 549 571 549 571 0.97
10 18 1.1e-05 0.00029 21.7 4.0 1 23 577 599 577 599 0.98
11 18 0.0013 0.036 15.1 5.6 1 23 605 627 605 627 0.97
12 18 1.3 37 5.6 1.6 1 14 633 646 633 649 0.90
13 18 1.9e-05 0.00052 20.9 2.3 1 23 973 995 973 995 0.98
14 18 4.5e-05 0.0012 19.7 7.0 1 23 1001 1023 1001 1023 0.98
15 18 6.2e-06 0.00017 22.4 1.1 1 23 1057 1079 1057 1079 0.98
16 18 1.5e-05 0.00041 21.2 5.6 1 23 1085 1107 1085 1107 0.97
17 18 1.5e-05 0.00041 21.2 3.9 1 23 1113 1135 1113 1135 0.98
18 18 9.9e-05 0.0027 18.6 3.0 1 23 1141 1163 1141 1163 0.98

Sequence Information

Coding Sequence
atgacCGAAGTATTGATAAATGGCTTTGGCCAAAGTTCAATGTGTCGGTTATGCTTATCGACTGACGTTACGGTATTAGACGTATTTTCCTTTTCAAAAACTTTGAAAGATCGAATAGCTAATATTATCATGAAGTGTGCCCCCATTCAGATAAAAAGAAGTGATGGGATGCCCAATTTCATCTGTCAGTTATGTTACACAAAACTGGAAAATACTCATCAGTTTCAGatgcaaataataaaatctgaGAAAACTTTGCAACTGTATTTAAACCATACACATGCTTTTGACAAAAAAGCTAACCTCGAGAGTTCCATTGATAGGCCGTCTGATGATTATTTAATCGATGACACTAATGTAGACATCACGGTGAAGTGTGAAACCTCGGAATTTACAGACGCATGTGTGAATTTGAGACAGAAAgtttttgagaattttaatACAGTGAGTAAAATCAATGACGAAACGTCTTTGAAATCCGAAATAAGAGACGAACAAATTGATGATAATTCATTAAATCCAGCAGAATGCGCAGTTCATTTATCTAAGGGTGATGAAGAAACACGCAATATTGTCGATATTGGCAATAATAAATTGGTGGAAGACATGAACTGGAAAGTGGAAGAACCTGCAAATTTTAACTCGACTTGCAAAAATTTTGAGGAAATTACTATAAAATCTGAAATCAAAGATGAACCGATGGACGATTTATCAATTCTGACGGAATCTATGAATGACTCATTAGACGATTTTTCTAAAGGAGTCAGCGAATTCAGCTGCGAAAATATAAAGGTCGACTTAGGCAACCTTTCGGGAAACTCTGcaggttatacttcttttgatgtGGAAGAGTGTTTTGAAAACTTTGCAGAAGGAATTAATAATTCCTCGAAGGATAGTGAGATACATGAAAAAGCCAGTAAAATAATATCGCGTCAGCTTAAAATTAAAGACACTAGTAAAATATCGCCATTTCAGTGTGAAGATTGCAATAAGTGTTTCGCTACGTCAAGCAGTTTAAATAATCACAAACGTATACACACGGGcgagaagccgtatcagtgtgacgatTGTGCTAAGAGTTTCACTACATCGTTCAGTTTAAAtattcacaaactgatacatactggtgagaaaccatatgagtgtgaagtttgtaaaaagtgtttcactcagttAGGTCATTTAAAAACTCACAAACTGctacataccggtgagaaaccatttaagtgtgacgtttgtaataagtgtttcactgtTTCCAGCAGTTACAAAAACCACAGACTGACACATACTGGTCAGAAACCTTATCAGTGCGACGtttgtgaaaaatgtttcactaCAACAAACAGTTTAAATAAACACAGACTgaaacatactggtgagaaatcgtatcagtgtgacgtttgttatAAGCGGTTTTATGATATAAGCGCTTTAAATGTTCACAAGCGgatacatactggcgagaaaccgttTCAATGTGATTTTTGTAATAAGCTTTTCACTCACTCAAGCAGTCTAAATACTCATAAAATGAGACATACtgatgagaaaccatatcatTGTGACAGTTGTTCTAAAAGTTTCCCTACATCGTTtagtttaaataaacacaaactgctacatactggtgagaagccatatGAATGTGATGTTTGCAAAAAGAGTTTTACTCAGTCAAGCACTTTAAGTACTCACAAACTGctgcatactggtgagaaaccatatgagtgtgacgtttgtaataagtgtttcactaaATCCAGCAGCTTAAATAACCACAAACTGACACATACTGGTCAGAAACCGCATCAGTGCgaagtttgtaataaatgtttcccTTCAACGAACAGCTTAAATAAACATAAACTGagacatactggtgagaaatcgtatcagtgtgacgtttgttatAAGCGGTTTTATGATTGGTTCAGTAACCATTGGTTTCTCAATTCTACTCACTGGCACCAACTGTGTAGAAATTGTTCAGAAGCTTACGCGCTTCAGAATAAAATTCAGATAATGAAAGAAGTATCGATAAATATCTTTGGTCAAAGTACAATGTGTCGGTTATGCTTATCGAGTAGCGTTACGGTATTAGACTTATTTTCgttttcaaacagtttaaaagATCGAATAGCTGATGTAATCATGAAATGTGCTCCCATTCAGAAATCGTCTGACGATTCTTCGATCGATCACACTAAAGCAGAAATCCCTCTGAAATATGAATCCTTGGATTTTAAAGACGTATTTGACGTGAATGTCAATTCGAGTgagaaaagttttgaaaattttaatgcaGCTAGCAAAATCAACGACCCAACGTCTTTGAAACACGAAATAAGAGACCAACAAATTGATGATATTTCATTAAATCCAGCAGAGTGCACAGATCATACAGTAGGCACTTTATCTAACGGTGATGAAGAAACTTGTAATATTGATGACAGTAAATTGGTGGAAGACATGGATATCAACAAGAATGTGGAAGATCCTGCAAATTTCAACTCGCCATTCAAAAGCATTGaggaaataactttaaaatccgaaatcaaagATGAACCATTGGACGGATCAACTATTCAGACGAAATTGTTTGATGGTTCAGAAAAAGGTTTCTTTCAAGGCGTTAGCGAAATAAGTTGCAAGGATACAAAGGATGTTTTTGATAACACATCGGGAAACTCCACATATCTTCGTTCTACTGTTTTAGaagattattttgaaaaaattgacgAAGGAATTAAAAATACCTCGGTGGATCGGGAGAAGCATAATAAAGCCAGTACTGTGAAGTCGCACCCATTTAAGATTAAAAACACGCATTTTTCTCGAGGGTCTAAAAAAAGTTACCCTGAAACtggctttttaaaaactcaCGAAGGTTCACGTATTAGTAAGAAACCATATCGCTGTGATGTTTGCAAGAAGTTTTTCACACAGTCAAGTagtttaaatactcacaaattgatacatactggtgagaaaccctATAAGTGTGACATGTGTAATAGGTGTTTCACTCAGTCAAGTCATTTAAAAACTCATAAACTGATACACACTGGTGAGAGACCATATCAATGCGACCTTTCTAAGAAGTGTTTTACTATGTTATGCAATTTAGAAACTTCCAAACCGCTACATACTGATGAGAAGACGTATCAgtgtgatgtttgcaataaatttttcacaCAGGCAAGTAGTTTGAATACTCACAAActaatacatactggtgagaaaccatatcagtgtgatgtttgtaataagtgttttacTCAGTCAAGTCACTTAAAAGTTCACAAACTActgcatactggtgagaagccgtatcagtgtgacgtttgtagtaAGTGTTTCACAACATTAGGTAATTTAAAAACTCATAAACGGCTACATACGGgggagaaaccatatcagtgtgacgtttgtaaaaagtgtttcactgcATTGAgtaatttaaatactcacagCCTGACACATACCAGTGAGAAACCATATTAG
Protein Sequence
MTEVLINGFGQSSMCRLCLSTDVTVLDVFSFSKTLKDRIANIIMKCAPIQIKRSDGMPNFICQLCYTKLENTHQFQMQIIKSEKTLQLYLNHTHAFDKKANLESSIDRPSDDYLIDDTNVDITVKCETSEFTDACVNLRQKVFENFNTVSKINDETSLKSEIRDEQIDDNSLNPAECAVHLSKGDEETRNIVDIGNNKLVEDMNWKVEEPANFNSTCKNFEEITIKSEIKDEPMDDLSILTESMNDSLDDFSKGVSEFSCENIKVDLGNLSGNSAGYTSFDVEECFENFAEGINNSSKDSEIHEKASKIISRQLKIKDTSKISPFQCEDCNKCFATSSSLNNHKRIHTGEKPYQCDDCAKSFTTSFSLNIHKLIHTGEKPYECEVCKKCFTQLGHLKTHKLLHTGEKPFKCDVCNKCFTVSSSYKNHRLTHTGQKPYQCDVCEKCFTTTNSLNKHRLKHTGEKSYQCDVCYKRFYDISALNVHKRIHTGEKPFQCDFCNKLFTHSSSLNTHKMRHTDEKPYHCDSCSKSFPTSFSLNKHKLLHTGEKPYECDVCKKSFTQSSTLSTHKLLHTGEKPYECDVCNKCFTKSSSLNNHKLTHTGQKPHQCEVCNKCFPSTNSLNKHKLRHTGEKSYQCDVCYKRFYDWFSNHWFLNSTHWHQLCRNCSEAYALQNKIQIMKEVSINIFGQSTMCRLCLSSSVTVLDLFSFSNSLKDRIADVIMKCAPIQKSSDDSSIDHTKAEIPLKYESLDFKDVFDVNVNSSEKSFENFNAASKINDPTSLKHEIRDQQIDDISLNPAECTDHTVGTLSNGDEETCNIDDSKLVEDMDINKNVEDPANFNSPFKSIEEITLKSEIKDEPLDGSTIQTKLFDGSEKGFFQGVSEISCKDTKDVFDNTSGNSTYLRSTVLEDYFEKIDEGIKNTSVDREKHNKASTVKSHPFKIKNTHFSRGSKKSYPETGFLKTHEGSRISKKPYRCDVCKKFFTQSSSLNTHKLIHTGEKPYKCDMCNRCFTQSSHLKTHKLIHTGERPYQCDLSKKCFTMLCNLETSKPLHTDEKTYQCDVCNKFFTQASSLNTHKLIHTGEKPYQCDVCNKCFTQSSHLKVHKLLHTGEKPYQCDVCSKCFTTLGNLKTHKRLHTGEKPYQCDVCKKCFTALSNLNTHSLTHTSEKPY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-