Vnig003103.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
-
Assembly
GCA_034508555.1
Location
JAVRKA010000005.1:12239944-12245585[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 5.5e-07 1.5e-05 25.7 2.1 1 23 217 239 217 239 0.98
2 14 4e-05 0.0011 19.8 0.8 3 23 247 267 245 267 0.97
3 14 2.5e-05 0.00069 20.5 4.5 1 23 273 295 273 295 0.99
4 14 2.7e-05 0.00075 20.4 4.4 1 23 301 323 301 323 0.99
5 14 4.5e-05 0.0013 19.7 3.5 1 23 329 351 329 351 0.98
6 14 1.1e-06 2.9e-05 24.8 0.7 1 23 550 572 550 572 0.98
7 14 2.3e-05 0.00062 20.6 2.4 1 23 728 750 728 750 0.98
8 14 8.6e-06 0.00024 21.9 3.5 1 23 756 778 756 778 0.98
9 14 2.5e-05 0.00069 20.5 3.0 1 23 784 806 784 806 0.99
10 14 9.2e-05 0.0025 18.7 1.1 1 23 829 851 829 851 0.98
11 14 1.2e-06 3.4e-05 24.6 1.6 1 23 857 879 857 879 0.99
12 14 1.3e-06 3.6e-05 24.5 1.3 1 23 885 907 885 907 0.99
13 14 7.8e-05 0.0021 18.9 4.0 1 23 913 935 913 935 0.97
14 14 1.2e-05 0.00033 21.5 5.4 1 23 941 963 941 963 0.98

Sequence Information

Coding Sequence
atgAATTCTGAGAATTGTGAAGATAACTCTGAATATGGTGAAGGAGATAAATTTTCTGCAAGCAATGACAGTAATTGTTCAAGATTAATATCCAGTGTTCAAACCGACATGCCATCGAACCAATACAGTTGTACTCAAGAagtaaaaagtgatttttcgaGTGTTACTATCAAATGTGAGGAACCAGATATAAGTGATTCTGACACATTAGATTTCAAGCCTCAGATATTGAATCCGGTTAATACTAACGAACAGTCAGATTTAGCTGTGAATATAAAACCTGACCTTTTTGGAATTGAGAGTCATGTGAAACAAGAATTCGTTTCTAATCAAGGAACAGGCCCGCCAGATACCGCCATAAAATATGAGAAATCAGATATGAGTTGCTCTgaaactatgttttttgaagaAGCGAAAATCTGGAACAATTTTAATGAACAATCTGATTTCAGTGCGTCAAACGCAAACTCGAGTGTAAAGTGTGATCCTTTAGCTACAGAAACCTTTgtaaaacaagaaaaagaaGCGTATGTTGACCCTTCATTTTCGACATTTAGTGATATTAACAGTGACACCGATTACAACAGTGTAAATGACCAATCTGTGCCAGTTAACGAAAATCGGTCAGAACTTAAAGACAAAACGTCatttcagtgtgacgtttgtaacgAGACTTTCACCAGgcgaactaatttaaaaaatcatatgcTTAAACATACCGGCGAGAAACCATATGGATGTGATGTATGTAGCAAGACTTTTTCTCGTTTAAGTTACTTAAATGATCACAAACGTGTACATACGGGTGAGAAACCATttcagtgtgatatttgtaataaaacttTCAACCGATCATGCGCTTTAAGTAGACATAAGAATACACATACTGGGgcgaaaccatatcagtgtgatatatgcaataaatattttactcaGTGCAGTACGTTAAAGATTCATAAACGCGTGCATTCGGGCGAGAAACCGCATCAGTGCGACATTTGTAACAAAAGTTTTAGCCAATCACAACAAGTAAGAACTCATAAACGTATACATGctgACGAAATAAGATCAACCTCCGATATTGAAGACGACATGGCGGTGAATCGAGACCGTTGTTCTAGTCAGTTAGCAAGAAGTGATTTTTCTGGCCTCGTCATCAAATGTGAGGAACCTGAAATGAGTGACATTGACATTTCCTATACTGAAATCGATTCCAAACCTCAAATATTCAATACGGTTAATACGAACGAACAGTCAGGTTTGGTTGTGAATATAAAACCAGATCTTTTTGAATTTGAGAGCAGTGTGAAACAAGAATTCGTTTCTAATCAAAGAGTAGGCCCTGTAAATGTCGCCATTAAATGTGAGAGAACAGAAGTGAGCTGCTCAGACACTatgtttttttctgaagaaGTGAAGAATACTATGGAAGAATCTGATGTCAGTGCCTTAGATGTAAATACAACTGTCAAATGTGACCCTTTAGCTACAGAGACCtacataaaacaagaaaatgaaGTATATATTAACCCATCGTTTTCGACACTTAGTGGTAGTGACAGTGACAGCGATCACAACAGTGGAGACGACCGATCTGTGTCTATTAACGGAAAACAATCACagctaaattgtaaaaacaaaacaccGTTTCGATGTGAAGTTTGTAATAAGACTTTCACTCGACGAGCTAGTTTAAAAGATCATATACTTATACATACAGAAGCACGAAGTGGAACTGAGGAACCAAAAATGATTGACTCTGATAATTCCAATACTGAAATGAATTCCAAAACTCAGATATTGAATACTAAACCTGGCCCTGTTGAAATTGAGAGCCATATGGAACAAGAATTCGTTTCTAATCAAGTAAAAGGTCCTATAGATGCCGCTATTACGTGTAAGAAAACAGAGAAGAATTGTTCCGACTCTGAGTTTTCCTTTGAAGAAGTGAAGATGAGCAATGAGTCTGGTTTTAATGTCTCAAACGCAAACACAAGTGTTAAGTGTGACCCCTTAGCTCCAGAAATTTacataaaagaagaaaatgaagTCTACGTTAGCCCATCGTTTTTGACATTTAGTGGTAGTGACAGTGACACCGATCACAACAGCGGGGAGGAAGAACGATTTGTGTCAGTTAATGCAAATCAGCCAGAGCTTGAAGTTAAACGCAAAACGCCAtttcaatgtgacgtttgtaataaaaaatttacccaGCGAGGTAAATTAAAAGATCATAAACTtacacataccggtgagaaaccacATCAATGTGATGAATGCAGTAAGAAGTTTACACGTTTGAGTAATTTGAATGATCATAAACGTATACATACCGGCGAGAAACCGTATAAATGTGATTTGTGTAATAAAACTTACAACCGATCAAGTGGTTTATTTAGACACAAAAGTACGCATGGAAAGGATCTATCGGTGTCAGTTAATGGAAATCGGCAAGAGCGCAAAGTTAAAATCAAAACGCCGTTTCAGTGCGACGTTTGTGATAAGACTTTCATGCAGCGAGGTAAATTAATAGATCATAGATTtacacataccggtgagaaaccatatcaatgtgatatATGCAGTAAAAATTTTACGCGTTCGAGTAATTTAAGTGATCACAAACGTATACATACGGGTGAGAAACCGTACAAATGTGATGTTTGTGACAAAACTTACAACCGATCAAGTGGTTTAATTAGACACAAAAAtacacataccggtgagaaaccataccgATGTGATATATGTGATAAGTGTTTTTTTCAACGCGAATCCTTAAAGGTTCACGAACGCTTTCATTCTGGAGAGAGACCCtatcaatgtgatgtttgtGAAAAATCTTTCATTCATTCAAGTCATTTACGGAGACACAAACTTAGACACAAGCGACTacagtttgaaaattttgattga
Protein Sequence
MNSENCEDNSEYGEGDKFSASNDSNCSRLISSVQTDMPSNQYSCTQEVKSDFSSVTIKCEEPDISDSDTLDFKPQILNPVNTNEQSDLAVNIKPDLFGIESHVKQEFVSNQGTGPPDTAIKYEKSDMSCSETMFFEEAKIWNNFNEQSDFSASNANSSVKCDPLATETFVKQEKEAYVDPSFSTFSDINSDTDYNSVNDQSVPVNENRSELKDKTSFQCDVCNETFTRRTNLKNHMLKHTGEKPYGCDVCSKTFSRLSYLNDHKRVHTGEKPFQCDICNKTFNRSCALSRHKNTHTGAKPYQCDICNKYFTQCSTLKIHKRVHSGEKPHQCDICNKSFSQSQQVRTHKRIHADEIRSTSDIEDDMAVNRDRCSSQLARSDFSGLVIKCEEPEMSDIDISYTEIDSKPQIFNTVNTNEQSGLVVNIKPDLFEFESSVKQEFVSNQRVGPVNVAIKCERTEVSCSDTMFFSEEVKNTMEESDVSALDVNTTVKCDPLATETYIKQENEVYINPSFSTLSGSDSDSDHNSGDDRSVSINGKQSQLNCKNKTPFRCEVCNKTFTRRASLKDHILIHTEARSGTEEPKMIDSDNSNTEMNSKTQILNTKPGPVEIESHMEQEFVSNQVKGPIDAAITCKKTEKNCSDSEFSFEEVKMSNESGFNVSNANTSVKCDPLAPEIYIKEENEVYVSPSFLTFSGSDSDTDHNSGEEERFVSVNANQPELEVKRKTPFQCDVCNKKFTQRGKLKDHKLTHTGEKPHQCDECSKKFTRLSNLNDHKRIHTGEKPYKCDLCNKTYNRSSGLFRHKSTHGKDLSVSVNGNRQERKVKIKTPFQCDVCDKTFMQRGKLIDHRFTHTGEKPYQCDICSKNFTRSSNLSDHKRIHTGEKPYKCDVCDKTYNRSSGLIRHKNTHTGEKPYRCDICDKCFFQRESLKVHERFHSGERPYQCDVCEKSFIHSSHLRRHKLRHKRLQFENFD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-