Vnig010305.2
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000025.1:2542275-2549694[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0021 0.057 14.5 0.2 1 23 325 347 325 347 0.99 2 19 0.00098 0.027 15.5 6.9 3 23 355 376 354 376 0.95 3 19 0.00041 0.011 16.7 0.8 1 23 382 404 382 404 0.97 4 19 7.8e-05 0.0021 18.9 1.1 1 23 410 432 410 432 0.99 5 19 1.6e-06 4.4e-05 24.2 3.6 1 23 438 460 438 460 0.98 6 19 0.12 3.4 8.9 3.3 1 23 466 488 466 488 0.98 7 19 0.00027 0.0074 17.2 8.3 1 23 622 644 622 644 0.96 8 19 4.2e-06 0.00011 22.9 1.1 1 23 650 672 650 672 0.95 9 19 0.00011 0.003 18.5 4.5 1 23 678 700 678 700 0.98 10 19 0.00011 0.0031 18.4 1.3 1 23 706 728 706 728 0.98 11 19 1.7e-05 0.00048 21.0 2.2 1 23 734 756 734 756 0.97 12 19 0.016 0.45 11.6 1.8 1 20 762 781 762 784 0.95 13 19 4.6e-05 0.0013 19.7 2.1 1 23 790 812 790 812 0.98 14 19 1.3e-05 0.00035 21.4 1.9 1 23 818 840 818 840 0.98 15 19 0.012 0.34 12.0 4.6 1 23 846 868 846 868 0.96 16 19 1.4e-05 0.00038 21.3 4.9 1 23 874 896 874 896 0.97 17 19 1.5e-06 4.2e-05 24.3 1.5 1 23 902 924 902 924 0.97 18 19 0.04 1.1 10.4 0.7 1 23 930 952 930 952 0.95 19 19 3.6e-05 0.00098 20.0 3.9 1 23 958 980 958 980 0.98
Sequence Information
- Coding Sequence
- ATGTCACAATTATTGGTAAACGAATACGATTTAACTACAACGTGCCGGTTGTGTTTATCACGTGGCGTAACAGTTTTAGACATATTTGTCTACTCAACTAAAATGAAAAATCGGGTAGCTGATCTAATCATGACATGTGCCCCCGTTAGGATTACAAAAAACGACGGAATGCCGAATTCCATCTGCCGCTTGTGCTGCACTCAACTGGAAAAAATTCACCAGTTCCAGACGCAAGTAATTGAGTCCGACAAAACCTTGCGGCGCTATTTCGACAAACAAACCAATGCTGGATCTTCCATTCAGAAATCTTCAATCCATGAAACTAATACAAATATCAGAGTGAAGTGTGAGCCTTTAGAACTTCCTGACGACATTGATAATCTGACGGAACCGATGAACACCAATTCAATATTCTTACCTGAATATAATACTGATACTTTACCAAATCATGGTTATAGTGAAATTAGCCGTAAAGACACAAAAAGAGGTATTGATGCCgttgtatttgataaaaatataagcaTCAGCtggaaagaaaaaatatcacgGAAGTTAAAGTTAGCGGATAAAAGCAATGATGAAGGATCTTTAAAATCCGAAAATCTGACTAATAATTCATTAATTCGACCTAAATGTAGTAATGATACAAGAGATGTGAATGCAGACATAAATGTGAAAGTAGAGCCTTTAGAACCAGATGTGTCTGATTCGTTATTTCCAACAGAATATGCCGATGACAATTTCTCAAGAAATGATAGTTGTGAAGACACAAAAATCGGTATATTGGGTGAAGACATGGGCGCCAACTGGAAAGATACAGAGCCAGGAAAGTTCAACTCAACGGACAAAATTAAGCAAGAAGTATTTTCAGATTCCGAACATCAGCTTGACGATACTGATGTTTTCAATAAAAGCCTTACTGATCTAAACAGTTTAAATCATCGCAAACCTATACATGTCAGTGAGAAACCTTATAGGTGTGACGTTTGTGCTAAGAGTTTTGTCGCTCTGGGTACATTAAAAGTTCACAAACTTACGCATACTAGCGCAAAATCGAATAtgtgtgacgtttgcaataaaTGCTTTACTACATCGGGTCATTTAAATGTCCACAAGCGCCACATGCATAAAGCCGAGAAACCTTATCCGTGCGACGTTTGTATCAAGTGTTTTAGTGATCTCAGCGATTTAATGCGTCACAAATTGATACATGCAAGTGAGAAACCGTATTCGTGTGACGATTGTAGTGAGAGCTTTCCTACTCTGAGCAGATTAAAAATGCACAAACGTacgcatactggtgagaaatcgtataagtgtgacgtttgcgaTAAATGCTTTAGTACATCAAGTACTTTAAATGTTCACAAACGGTTGCATACAGGCGAGAAACCTTATGAGTGCGACGTTTGTATGTTGTGTTTTAGTGATTTTAGCAAGTTAATGTATCACAAAAGTACTCATGCCAGTGTGAATCCGTTTACGTGTGACCAGATATCTAAACAAGATGAATTTCCCAAAACCGTTTGCGCTCTCTGTATCCTAGAACTcgaaaaaatacataagttcCAAAACCGCGCGTTAAAATCGGAGCAGACGCTAATTCTTCATTTGAAAGAACAGATCGACGCCACGTCGAAGTATTTAATTCAGAAACAATCTGAATAttctgaaaatcaaaatatcgacCCCAAAGACATttctttaaactattatttaaacgTAGATTACGTCGAAGACGTTACATCGACCATTTCCGATGTAAACGATCCAAAAACTTCTGACACACCGATTGAAACTCCCGAACCCGACGAGAACAGTTGCGAATCAAATCTTAAAACATCGTCCACGTCAAAAAAATCGCATCATTGCGAAGTGTGTAACAAATGTTTCAACCAACCCAGTCAATTGAAACGCCATAAACTCAAACATACCGGAGAGAAACCGTATCCGTGTGATATTTGCGACAAAAAATTCACTAGTGCCAGCAATTTGAAAACGCACAAATTCCTCCACAACGAGGACAAATCATTTtcgtgtgacgtttgtaacaaATGCTATACAAGTTCGGTTACACTAAAAAGACACAAACGTCTGCATAACAGTGATACGCtatatcaatgtgacatttgtaaaggCGGGTTCAAACAATCCAATCATTTAAAAGTTCACATACTTTCGCATACAGGGGAAAAGCCGTATAAATGTCATATTTGTGAAAAGCGGTTTGTAAGTTCTagttatcttaaaattcacGTAGAACAGCACAGTGGCGAAAAAACGTACCGGTGCGATATCTGTGGCAAATATTTCACTTGCGCAATAACCTTGAAACGACACCAGCCGCTACATACCGGTGATACgcaatatcaatgtgacgtttgcaacAGATGCTTTACAGGAGCTACGAATTTAAAACAGCACAAACttgtacatactggtgagaaaccgttcCGCTGCGATATTTGCGAGAAAGGTTTTTCACAACTAGTTCACTTGAAAACACATACGAGGATACATACAGGGGAGAAACCACACAAATGTAAAGTTTGCAACGAATCGTTCACACACATAAACAGTCTGAAGTTGCATAATTTGTCGCATAACGGTGAGAAACCGCATCAGTGTGAAATTTGCGGCAAGAAGTTCTCGCAGTCAACGCATTTGAAAACGCATAAACTTGTGCATACTGGTGATAAACCTTTCAAGTGTCCGGTTTGCGACAAGCGATTTGTTAGATCGACTGATCTGAGACGTCATAAACAATTGCACTGCGATGGTAAGTCGCAtagatgtgacgtttgtaacgAATGGTTTAGTGAGTCGGGTGAGTTGAAAAAACATAAACTTGCGCATGCTGGTGAGAAGTCGTATCAGTGTCACGTTTGCGACAGGACTTTTACTTATTCAATCACTTTAAAAACTCATATGACTCAACATAGTGATGAAGAAAGAACGACcgcgaaaataattttaactgatTTGAGTTAG
- Protein Sequence
- MSQLLVNEYDLTTTCRLCLSRGVTVLDIFVYSTKMKNRVADLIMTCAPVRITKNDGMPNSICRLCCTQLEKIHQFQTQVIESDKTLRRYFDKQTNAGSSIQKSSIHETNTNIRVKCEPLELPDDIDNLTEPMNTNSIFLPEYNTDTLPNHGYSEISRKDTKRGIDAVVFDKNISISWKEKISRKLKLADKSNDEGSLKSENLTNNSLIRPKCSNDTRDVNADINVKVEPLEPDVSDSLFPTEYADDNFSRNDSCEDTKIGILGEDMGANWKDTEPGKFNSTDKIKQEVFSDSEHQLDDTDVFNKSLTDLNSLNHRKPIHVSEKPYRCDVCAKSFVALGTLKVHKLTHTSAKSNMCDVCNKCFTTSGHLNVHKRHMHKAEKPYPCDVCIKCFSDLSDLMRHKLIHASEKPYSCDDCSESFPTLSRLKMHKRTHTGEKSYKCDVCDKCFSTSSTLNVHKRLHTGEKPYECDVCMLCFSDFSKLMYHKSTHASVNPFTCDQISKQDEFPKTVCALCILELEKIHKFQNRALKSEQTLILHLKEQIDATSKYLIQKQSEYSENQNIDPKDISLNYYLNVDYVEDVTSTISDVNDPKTSDTPIETPEPDENSCESNLKTSSTSKKSHHCEVCNKCFNQPSQLKRHKLKHTGEKPYPCDICDKKFTSASNLKTHKFLHNEDKSFSCDVCNKCYTSSVTLKRHKRLHNSDTLYQCDICKGGFKQSNHLKVHILSHTGEKPYKCHICEKRFVSSSYLKIHVEQHSGEKTYRCDICGKYFTCAITLKRHQPLHTGDTQYQCDVCNRCFTGATNLKQHKLVHTGEKPFRCDICEKGFSQLVHLKTHTRIHTGEKPHKCKVCNESFTHINSLKLHNLSHNGEKPHQCEICGKKFSQSTHLKTHKLVHTGDKPFKCPVCDKRFVRSTDLRRHKQLHCDGKSHRCDVCNEWFSESGELKKHKLAHAGEKSYQCHVCDRTFTYSITLKTHMTQHSDEERTTAKIILTDLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -