Vnig010327.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
-
Assembly
GCA_034508555.1
Location
JAVRKA010000025.1:2955405-2958637[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.7e-05 0.00046 21.1 1.4 1 23 399 421 399 421 0.98
2 16 3.4e-05 0.00094 20.1 1.2 1 23 427 449 427 449 0.98
3 16 1.2e-06 3.4e-05 24.6 1.6 1 23 455 477 455 477 0.99
4 16 1.1e-05 0.00029 21.6 0.8 1 23 687 709 687 709 0.98
5 16 1.3e-06 3.5e-05 24.6 2.4 1 23 715 737 715 738 0.96
6 16 0.00031 0.0086 17.0 1.8 1 23 743 765 743 765 0.98
7 16 1.3e-07 3.5e-06 27.7 1.8 1 23 771 793 771 793 0.99
8 16 8.7e-05 0.0024 18.8 3.0 1 23 799 821 799 821 0.99
9 16 0.00022 0.006 17.5 2.1 1 23 827 849 827 849 0.98
10 16 0.00025 0.007 17.3 4.6 1 23 855 877 855 877 0.98
11 16 8e-06 0.00022 22.1 2.5 1 23 883 905 883 905 0.99
12 16 8.1e-05 0.0022 18.9 3.7 1 23 911 933 911 933 0.99
13 16 6.4e-05 0.0018 19.2 1.0 1 23 939 961 939 961 0.98
14 16 1.8e-05 0.00049 21.0 2.7 1 23 967 989 967 989 0.99
15 16 0.00099 0.027 15.5 5.3 1 21 995 1015 995 1017 0.94
16 16 9.8e-07 2.7e-05 24.9 0.4 1 23 1023 1045 1023 1045 0.98

Sequence Information

Coding Sequence
ATGACAGAAATATTGATAAATGGCTGCGGCTTAAGTACAATGTGTCGATTGTGTTTATCACGTGATGTAATATTATTAGACATATTTTTCTTGTCGCCTGAAATGATGAATCAAGTAGTTAATGTAATTGTTACATGTGCTCCCGTTAAGATTACGAAAAACGACGGAATGCCGAATTTCGTCTGCAAATTATGTTTCACTCGACTGAAGAAAATCCGCGACTTCCAGATGCAAATAGTGCAATCTGACAAAACACTTCGACGCTATCTAGAGCAACTAGGCGGCCCTGACTCACACCTCAAGAAATCATGTTCTATTCCGGAGCTTTCTGAGAAGCCTTCAATCTATGAAACTAACGTAGATGTCTCTGTAAACTGTGATTCTTTAGAGCTTCAAGACGTAATTGACACTATGAACGACAATTCGTTATCTTTTACTGAATGTGCCAATGAAACCTTGTCAAATGATGATCATAGTGAAATTAGCAGTGAAGACACAAAAATCGGTATTGGTGCCGTTTTATTTGATCAAGATACCAGTGTCAACTGGAAAGAAAGAGAACCACCTAATTTCAAGTTAGTGAATAAAATCAAGGACGAAGTAGTTTTAAAATCTGAGATTCAGACAGATGAAGTATTAGTTCGACCAGAATATGTTGATGACATAGGAGGTACTAATACAAATGATggaattaatgttaaaatatgtgAATCTTTAGAAATCCAGGATGTGTTTGAGGTGGGCGGATTGACGAATGATAATTCGTTATTTTCAACGGAATGTGCTGATGATATTTCATTAAAGGATGGCTACAGTGAAATAACTTGTGAAGACACAAAAATCGGTTTTGGTGACATTATGTTGGATGAAAAGACGTCTGTCAACTGGAAAGATGAAGAACCAGGGAAGTTCAACTCAGCGGATAAAATAAAGCGCGAAGTGTCTTCAAATTCCGAACATCAGTCGAATGTGTTAATTCGACCAGGTTTAAATTATGACACAGGAAATGCTCCGTTAAGCGGTAACGACAGTGAAATCAGCTGTAAAGATACAAAGACATGTGTTGGTCCCTCAACGGGAAAATTTGCGATTCCTCGTACTGCTAATGTAAAGCGTGACAAACGTGAAGAGAACAATAAGAGTATCTTTACAAATTCTACGAAACACAAaggaaataaaacaatacaaaaaacgTTTAACTGTGGCGTTTGTGACAAGTACTTTTCTACTTCGGGCTATTTAAAAGTTCACAAACGTACGCATACTGGTGTAAAACCGTATAAAtgcgacgtttgtaataagaattTTACTCAATTGTGGTATTTAAAAGTTCACAAACGTGCACATGCTGGTTTGAAACCGTtcaagtgtgacgtttgtaataagagctttATTAATTCAAGCAATTTTAACGTTCACAAACGTATACATGCTGCTGTGAAACCGTATAAGTTAGTGAATAAAATCAAGGACGAAGTAGTTTTAAAATCTGAGATTCAGACAGATGAAGTATTAGTTCGACCAGAATATGTTGATGACATAGGAGGTACTAATACAAATGATggaattaatgttaaaatatgtgAATCTTTAAAACTCCAGGATGTATTTGAGGCGGACGGATTGACGAATGATAATTCGTTATTTTCAACGGAATGTGCTGATGATATTTCATTAAAGGATGGTTACAGTGAAATAACTTGTGAAGACACAAAAATCGGTTTTGGTGACATTATGTTGGATGTCAACTGGAAACATGAAGAACCAGGGAAGTTCAACTTGGCGGATAAAATAAAGCGCGAAGTGTCTTCAAATTCCGAACATCAGTCTGATGTGTTAATTCGACCAGGTTGTAACAATGACACTGGAAATGCTCCGTTAAGCGGTAACGGCAGTGAAATCAGCTGTAAAGATACAATGCCATGTATTGGCCCCACAACGGAAAAATTTGCGATTCCTCGTACTGCTAGTGTAAAGCGTGACAAACGTGAAGAGAACAATAAGAATATCTCCACAAATTCTGCGGGACACAAAggacataaaacaataaaaaaaacgtttaattgCGGCGTTTGTGATAAGTACTTTTCTACTTTGGGCAATTTAAACGTTCACAAACGTACGCATACTGGTGTAAAACCGTataagtgtgacatttgtaatcaGAGCTTCATTAATTCGAGCAATTTAAACGTTCACAATCGTACACATCATGGCGTGAAACCgtataaatgtgacgtttgtaataagaattTTACTAAATTGGGTTATTTTAACGTTCACAAACGTGGACATGCTGGTGTGAAACCGTAtacgtgtgacgtttgtaataagagttttacTAATTCGAGCGATTTAAAAGTtcacaaacgcacacatactGGTGTGAAACCGTATAAGTGTGTCGTTTGTAATAAGACTTTTACTAAATTGGGTTATTTTAAAgttcacaaacgtacacatacttGTATGAAACCgtataaatgtgacgtttgtaataagaattTTACTAAATTGGATTATTTTAACGTTCACAAACGTGGACATTCTGGTGTGAAACCGTAtacgtgtgacgtttgtaataagagctttACTAATTCGAACCATTTAAAATTTCACGAACGTACGCATACTGGCGTGAAACcgtataagtgtgacgtttgtaatcaCAGGTTTATTAGTTCGAGCAATTTAATAGTtcacaaacgcacacatactggtgtgaaaccgtataagtgtgacgtttgtaatcaTAGCTGCGCTAATTCGAGCAATTTAAACGTTCACAAACGTATACATACTGTCGTGAAACCGTTTACGTGtgtcgtttgtaataagagttttacTCAATTGTGGTATTTAAAAGTTCACAAACGTGGACATGCTGGTGTGAAACcgtataagtgtgacgtttgtaataagaacTTTAATACTTCCAACACTTTAAACCTTCACAAACGTACACATGCTGGTGTGAAACcgtataagtgtgacgtttgtaataagagctttACTCAGTTGTGCcatttaaataatcataaaaatccaCATACTGCCGTGAAAGCGTAtgaatgtgacgtttgtaataagagctttATTAGTTCGAGCAATTTAATACTTCACAAACGTGTACATACTGGTGTGAAACCGTATAATTAA
Protein Sequence
MTEILINGCGLSTMCRLCLSRDVILLDIFFLSPEMMNQVVNVIVTCAPVKITKNDGMPNFVCKLCFTRLKKIRDFQMQIVQSDKTLRRYLEQLGGPDSHLKKSCSIPELSEKPSIYETNVDVSVNCDSLELQDVIDTMNDNSLSFTECANETLSNDDHSEISSEDTKIGIGAVLFDQDTSVNWKEREPPNFKLVNKIKDEVVLKSEIQTDEVLVRPEYVDDIGGTNTNDGINVKICESLEIQDVFEVGGLTNDNSLFSTECADDISLKDGYSEITCEDTKIGFGDIMLDEKTSVNWKDEEPGKFNSADKIKREVSSNSEHQSNVLIRPGLNYDTGNAPLSGNDSEISCKDTKTCVGPSTGKFAIPRTANVKRDKREENNKSIFTNSTKHKGNKTIQKTFNCGVCDKYFSTSGYLKVHKRTHTGVKPYKCDVCNKNFTQLWYLKVHKRAHAGLKPFKCDVCNKSFINSSNFNVHKRIHAAVKPYKLVNKIKDEVVLKSEIQTDEVLVRPEYVDDIGGTNTNDGINVKICESLKLQDVFEADGLTNDNSLFSTECADDISLKDGYSEITCEDTKIGFGDIMLDVNWKHEEPGKFNLADKIKREVSSNSEHQSDVLIRPGCNNDTGNAPLSGNGSEISCKDTMPCIGPTTEKFAIPRTASVKRDKREENNKNISTNSAGHKGHKTIKKTFNCGVCDKYFSTLGNLNVHKRTHTGVKPYKCDICNQSFINSSNLNVHNRTHHGVKPYKCDVCNKNFTKLGYFNVHKRGHAGVKPYTCDVCNKSFTNSSDLKVHKRTHTGVKPYKCVVCNKTFTKLGYFKVHKRTHTCMKPYKCDVCNKNFTKLDYFNVHKRGHSGVKPYTCDVCNKSFTNSNHLKFHERTHTGVKPYKCDVCNHRFISSSNLIVHKRTHTGVKPYKCDVCNHSCANSSNLNVHKRIHTVVKPFTCVVCNKSFTQLWYLKVHKRGHAGVKPYKCDVCNKNFNTSNTLNLHKRTHAGVKPYKCDVCNKSFTQLCHLNNHKNPHTAVKAYECDVCNKSFISSSNLILHKRVHTGVKPYN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01511037;
90% Identity
iTF_01511037;
80% Identity
-