Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: RBM5
Assembly: GCA_034508555.1
Location: JAVRKA010000125.1:233758-259460[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 0.0033 0.09 13.8 7.0 2 23 147 168 146 168 0.98

2 22 3.7e-05 0.001 20.0 0.6 2 23 181 202 180 202 0.96

3 22 0.8 22 6.3 0.7 2 23 208 229 207 229 0.94

4 22 0.058 1.6 9.9 0.1 2 20 232 250 231 253 0.92

5 22 0.00059 0.016 16.2 0.6 1 23 259 281 259 281 0.98

6 22 3.4e-05 0.00094 20.1 0.0 1 23 287 309 287 309 0.96

7 22 5.5e-07 1.5e-05 25.7 1.6 1 23 315 337 315 337 0.98

8 22 4.4e-06 0.00012 22.9 1.2 1 23 344 366 344 366 0.99

9 22 3.1e-05 0.00085 20.2 3.2 1 23 372 394 372 394 0.97

10 22 1.6e-06 4.5e-05 24.2 1.8 1 23 400 422 400 422 0.98

11 22 1.2 34 5.7 0.1 1 14 428 441 428 444 0.86

12 22 0.0007 0.019 15.9 1.7 3 23 584 604 582 604 0.96

13 22 1.1 31 5.9 2.2 2 23 607 628 606 628 0.97

14 22 0.041 1.1 10.4 0.8 3 23 651 671 649 671 0.96

15 22 5.4e-05 0.0015 19.4 0.4 2 23 677 698 676 698 0.97

16 22 3 83 4.5 0.1 3 20 702 719 701 722 0.92

17 22 0.00012 0.0033 18.3 0.7 1 23 728 750 728 750 0.98

18 22 0.00012 0.0032 18.4 0.1 1 23 756 778 756 778 0.95

19 22 4.7e-06 0.00013 22.8 2.4 1 23 784 806 784 806 0.96

20 22 1.9e-06 5.1e-05 24.0 1.2 1 23 813 835 813 835 0.98

21 22 0.0006 0.017 16.1 2.5 1 23 841 863 841 863 0.97

22 22 0.011 0.3 12.2 0.4 3 22 1674 1693 1672 1697 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	0.0033	0.09	13.8	7.0	2	23	147	168	146	168	0.98
2	22	3.7e-05	0.001	20.0	0.6	2	23	181	202	180	202	0.96
3	22	0.8	22	6.3	0.7	2	23	208	229	207	229	0.94
4	22	0.058	1.6	9.9	0.1	2	20	232	250	231	253	0.92
5	22	0.00059	0.016	16.2	0.6	1	23	259	281	259	281	0.98
6	22	3.4e-05	0.00094	20.1	0.0	1	23	287	309	287	309	0.96
7	22	5.5e-07	1.5e-05	25.7	1.6	1	23	315	337	315	337	0.98
8	22	4.4e-06	0.00012	22.9	1.2	1	23	344	366	344	366	0.99
9	22	3.1e-05	0.00085	20.2	3.2	1	23	372	394	372	394	0.97
10	22	1.6e-06	4.5e-05	24.2	1.8	1	23	400	422	400	422	0.98
11	22	1.2	34	5.7	0.1	1	14	428	441	428	444	0.86
12	22	0.0007	0.019	15.9	1.7	3	23	584	604	582	604	0.96
13	22	1.1	31	5.9	2.2	2	23	607	628	606	628	0.97
14	22	0.041	1.1	10.4	0.8	3	23	651	671	649	671	0.96
15	22	5.4e-05	0.0015	19.4	0.4	2	23	677	698	676	698	0.97
16	22	3	83	4.5	0.1	3	20	702	719	701	722	0.92
17	22	0.00012	0.0033	18.3	0.7	1	23	728	750	728	750	0.98
18	22	0.00012	0.0032	18.4	0.1	1	23	756	778	756	778	0.95
19	22	4.7e-06	0.00013	22.8	2.4	1	23	784	806	784	806	0.96
20	22	1.9e-06	5.1e-05	24.0	1.2	1	23	813	835	813	835	0.98
21	22	0.0006	0.017	16.1	2.5	1	23	841	863	841	863	0.97
22	22	0.011	0.3	12.2	0.4	3	22	1674	1693	1672	1697	0.92

Sequence Information

Coding Sequence: ATGGATGCATTTATAAGCGATACTTGCCGAACTTGTTTGTGTAAAGATAGTTCATTGCTGTCAGTTTTCAGTCTCGAAAATGTCAATTCTCTTTGGATACCAATTTCTGACATGCTGTTAGAATGTGCTTCTGTACATCAATGCTGCGAATCGGAACGGGCATTGCTTACATTATACGAACAATTGGAAAATTCTGACACCAAAAATGCAGCTTCATCGATTTCTGTAAAAGACGAACTGAAATATGAAATCAAAACCGAAAATGCATCAGAAAACGAAACTCTTGGAGGCAATGACTGCAATCTGGAAATCAAATCGGATTTTTCTGACAATTGCGATGACGAAACTCCAATTTTGGATACCGATTCAAACACGACaaataaaacgaaagaaaaaaacaaaatcagaaaaaagaaattgaaaactAAACAGGTTACACAGTGTCCAAAATGTAATAAGAAATTCAAAGTTCATCACAGATTATTGAAACATATGCAGACTCATTTAGGTATTAAACCTGAAACTGAAGAAAGTTCATTGAATTGCACAATGTGTGATAAGTCTTTCAAGCAGAAAATTGATTTAGCAGAGCACATGAGCAGTCACGTAGACATCAAATGGAGATGCCATATTTGCGATAAGTTTTATTTGGCTGAGTGGGCCATGAAAAAGCATCTTTTGACACACAAAATCACGTGCAAAGTATGCTTTATAGAATTCAAAACTAACGCCGATTTAGAAGAACATTTGCCCGTACACAAAGACCACTTGCCTTTTGTGTGCAAAGAATGCGGTAAGcagtttcaaataaaaagaagacTCGTCGTTCACATGAGGgTTCACACAGGCGAAAGAAATTATCTATGTACAATTTGTGGGAAAGCTTTTGCGTTGCCTGGAAACTTAAGCACTCATTTACGAATTCATAACGGCGTCAAACCATATGCCTGTAAAGTTTGTGATAAGTCTTTTTGTCAATGGAGTACATTGCAAGATCATATGATAACCCACAACAATGGGGAATGTCCTTATGTGTGTCAAACTTGCGGCCGGGCGTATAATCGTAAACAGACGCTGGCGAGACATATGCGAAGACATACGGGCGATCGAAGACATCCTTGTACATACTGTGATAAAAGATTTTATCAATCAAAGGAACTAAATAATCATCTGTTAACTCACACCGGTGAGAAAAATCACAAATGTGAGTTTTGTGGAAAAGCGTTTGCACGCTCGTCAAATTTGAACGTCCATAGAAAAATTCACACCGGTGATCGACCGCACGTCTGTTCTACCTGCGGCAGAGGATTTATACAACGCCATGTCTTAACATGCTTATGCAACGACGTAAATTCATTGGTGTCAATATTTGATTCGGAGACCATCGATGCGAATTGGTTATCTATTTCTGACATGCTATTAGAGTGCGCCGCCGTACATGTAAAAAATGACGATCTGCTGCCAAAATTTATTTGCAAAGAATGCATCGAACATGTTAAAGACAGTTACGTATTCAAAAAACGCTGTCAAGAATCCGAACAAGCTCTTCTATTATCTTACGAAAAACTGGAAACAGAAAAACTTCCAGTAACGGAAATAAAGGCTGAAGTTAAAGATGAAATTAAAGATAATAATTCGGATGACGACATGGATTTATCTTCGCATTTCTTACCAGAAGAGATAAAAACAGAATCGGATTGTCCTGAAAGTGATAATAAAAAGTTAGAAAGCAAAACTGCCTCGTTGGCGTGTTCTGTGTGCAAGAAGACGCTGAAAACGAAATACAAACTTCTGAAGCACATCAAAAGTCACGAAATCCGGTGCAAGATATGTGACGAGAAATCCGAAAACAAATATAAGCACCGAGAGCATATGGCAACGCACGGGATGAAAATTAGAaagaaaatcattaaaaagattGTTAAAAAGCCCGAGACTGGATTATGGGATTGTATGGTATGCGAGAAAACCTTCGAGAAATACAGTGAATTTTCCGAGCACAAGAAAAGCCACATAGAAAACAAATGGAAGTGTGATTATTGCAATAAATCTTACATTGTGAAATATGCGCTGAAAAGACATTTATTGATTCATAAAAACGCGTGCGAAGTGTGTTTCATGGAGTTCGAAAACCAAACCGGATTGGAGGAGCACAAGCCCATTCATAAAGACCATTTGCCGTTTGTGTGTAAAGAGTGCGGAAAACAGTTTGAAAAGAAACGTTTACTCGTATTACACTTAAAGatacatactggagagaaaAACTTTTTATGCACAGTCTGCGGTTTGGCGTTTACTCTGCCGGGAAATTTAAATACACATTTAAGAATACATAGTGGAGTAAAACCGTACGCGTGTAAACTTTGTGATAAATCATTCTGTCAGTGGAGCTCATTGCGCAATCATATGGTAAACCACAACAAAGGAGAAAAACCATTCGTTTGTCAGACATGCGGAAAAGCGTTTCCTCGCAAGCAAACCTTAACCATGCATATGAGAAGGCACACGGGTGATAAACGATATGCTTGCACCTACTGCGATATGCGTTTCGTTCAGAAATGTGAATTACGAGATCACCTTCTCAAACACACAGATTATGACGAAACTCGTTATCTTCATTATGTAGACGATCACGATAGTGATTCAAGGTCACCAGAAGATTGGCAGTCTCGATATGATAATCATGAAAGAAGCGAAAGAAGTCAGTATGAAAGAAATTACTTCCGATATCGTTCGAGAAGTCGAAGCCGAGATCGTAGCAGAGATAGAAGCGTAGAGGAAAGGCCTCGTGATAGAGATCGTGACTACGAACACCGAACCTACAGTCGGGACAGATATTACGCCAGCGAAAGAAATTACGATGACGTCCGAGAAGAATCGCGCGATAGGGACTATTATTTCGTTGACAGCGAAAGAGAATTCAAGGATCGAGAGCGGCGTGATAGGAATCGAGATCGAGATAGGCACGAAAGAGACAGAAGTTATGAAAGAGAGAGAAGCTACGATCGGGATAAGGACAGAGATTACGATAGAAAGAGGGATTACGGCCGGGACCATGGAGATTCAGAGCGAGACCGAGCCAGAAGTCACGACAGGGACAGGGATCGGAGTCGAAGAAGAGATGATCGTAGCAGAAGAAGTCGGAGAGATGACAAGGACAGAAATTATGACGGAGACAGAATAAATTCACACAGGGATGAAGAAAGCCAAAATAGTTCCGATGCtaggggAGATCCAGACAACTTTCGAAACCAACCGCCCAACAATACAATAATGATTAGAGGCTTAGCACAACATATTACTGAAAATGATATTCGCCAAGACATTATAGCATGTAATTTGGTACCGAAAGAAATTCGACTTATCCGAAAAAGAGATACAgGTACATCGCGAGGTTTTGCGTTTGTCGAGTTTTCCACACTGCAAGAAGCTCAACATTGGATGGAGATGAAACAGGGTATACTCATGCTGCAAGATCAGTATCGTGCCGTGATGCTGTACAGCATACCCAAAGACAGCTCGGAACAATCGGTCGGATCGTTTGGCACTTCCAAAGATGGCGCCTCGTCTTCGGCTTCCGATAAACAGAAAAGACCTTCGTCCGACTGGTATTGTATCAAGTGCGCTGCGCACAATTTTAGACGTCGGTTTTGCTGTTACCGCTGTCAAACAACGAGAAAAGAAAGTGAAGAAGGAGGAAACGGCAGCAATGAAGTGTCCCAGTATGCTACTAAAACCGTTATGCTACGTAATTTAGATGCGCTATCAACTGAAGATTCTGTAATGGCCGTTATAAAGAACGTGGCCAATCATTTAGTAAAATACATAATCGGTGTACTAATCGGCCGAGATCCTTTAACTTCAACGTCGCGAGGCGTTTGTTACCTCGATATGGAAACAACAGTCGAAGCTCTCAGTTTACACGGAATCCTCAAGGGTTTGAGTCCACCATTGACAATCGACGGCAAAGAAGtaAGTGTATCTTTCTGCAAGTATCGAATGGGCGATATTAACAACATGTTTCCTCAAGTCGCGTTCGCTACTGCGAACACGGCACAGACATACACAATGAACGATTTGAACGCGTTGGCAGATTATAGTGCGAGTCGATACGCAAAGACACCGGCGCAGTACCAACACTACTACGAATACTACAAACAGTATTTCGCCCAGCAAATAGCTCAGGGTGCTGCAATTACGTTGTCGGACGATAGTCAAGCAAATTCGGTGAACGCAGCTGCAGCCGTAGCTCACGCCGCAATACAAAAACAAAGACAGGGCAAATTGGCTACGGATACGATGCTCAGCGCACCCACGGGAAGCGATGGAAAAAAATACcCTATACCAGATGTCAGCACCTACCAGTATGACGACACTACAGGGTATTATTACGACTCTGTAACGGGGCTGTATTACGACGCCACTTCGCAATATTATTACAACAGCGTCATACAGAAATACCTTTACTGGGATAGTTCCCAAATGACGTACATATTGGCGCCTACCCAAATGTCTGCGGCTACCACTGCAACTTCCACACCTTCGACGGTTAGTGCTCCGGCGACTACTGCGGCGGTCATTGAACAGAGCGCGATTGAAACGCCAAAAACGGAGGAAAAGAAAAAGATTAAAAGTGAAAAGGCTGATAAAAACAAAGTTGCTAAGAAAATCGCGAAGgaCATGGAAAGGTGGGCGAAATCGATGAACAAAAACAAAGAAGCGCTGAGATCGGCATCGTCGGATTTTAATCTTGGTGGACAGTCGAACTCCGGATCTTTCGCAGCTTCTGCCGATATAGGTTTTGCTGTACTTGAAAAGAAAGCAGCCGTCGGTTCCAATTCAGGAAATACTTTGCTTTCGCAGAGAGCGTCCGCTGAATATTCAAGAACCAATTCGTCCAATAGCGGCACACTCGTGGCTGCATACGGGGGTGGAAGCGACACATCGGGAGATGAAGATAATTCACAGCCGGCTGTGGATTTGGATTTAATCGAGGGCCTCGATTGGAACAGAATGATTTGCATGCTGTGTAAACGACAATTTTCGTCCAAAGAAGCTTTAGCTAAACATCAGAAGGTGTCTGAGTTACATCGAAACAATTTGGAACAGTACTGTCAGCAGCATGGAATAACTAAAGAACAACCAATCAAATACAGAGATAGAGCAAAAGAAAGAAGACAAAAATTCGGTGAAGCAGATCCACCGGCGCCTAGCaaactaaaagaaaaatatttaaagtcgCTCGAAGCCGCTGAGACAGCAGCGTCCGTAGCTGCATCGAATAGTTTACCTCAGGTTCCGATCGGTTCAGACAATGTTGGTagtaaaatgttacaaaaaatggGCTGGTCCGAAGGTCAAGGCTTAGGACGAGATAATCAAGGTCGAACGTCCATTATTCAGgcTGAACGGTTAGTAAGTACGGCCGGTTTGGGTGCCAAAAGCAACGCTTACGCCGCACTCCCTGGTGAGAGTTACAAAGACTGCGTTAAAAAGATGACATATGCGCGATATCAAGAACTCAACAATTGA
Protein Sequence: MDAFISDTCRTCLCKDSSLLSVFSLENVNSLWIPISDMLLECASVHQCCESERALLTLYEQLENSDTKNAASSISVKDELKYEIKTENASENETLGGNDCNLEIKSDFSDNCDDETPILDTDSNTTNKTKEKNKIRKKKLKTKQVTQCPKCNKKFKVHHRLLKHMQTHLGIKPETEESSLNCTMCDKSFKQKIDLAEHMSSHVDIKWRCHICDKFYLAEWAMKKHLLTHKITCKVCFIEFKTNADLEEHLPVHKDHLPFVCKECGKQFQIKRRLVVHMRVHTGERNYLCTICGKAFALPGNLSTHLRIHNGVKPYACKVCDKSFCQWSTLQDHMITHNNGECPYVCQTCGRAYNRKQTLARHMRRHTGDRRHPCTYCDKRFYQSKELNNHLLTHTGEKNHKCEFCGKAFARSSNLNVHRKIHTGDRPHVCSTCGRGFIQRHVLTCLCNDVNSLVSIFDSETIDANWLSISDMLLECAAVHVKNDDLLPKFICKECIEHVKDSYVFKKRCQESEQALLLSYEKLETEKLPVTEIKAEVKDEIKDNNSDDDMDLSSHFLPEEIKTESDCPESDNKKLESKTASLACSVCKKTLKTKYKLLKHIKSHEIRCKICDEKSENKYKHREHMATHGMKIRKKIIKKIVKKPETGLWDCMVCEKTFEKYSEFSEHKKSHIENKWKCDYCNKSYIVKYALKRHLLIHKNACEVCFMEFENQTGLEEHKPIHKDHLPFVCKECGKQFEKKRLLVLHLKIHTGEKNFLCTVCGLAFTLPGNLNTHLRIHSGVKPYACKLCDKSFCQWSSLRNHMVNHNKGEKPFVCQTCGKAFPRKQTLTMHMRRHTGDKRYACTYCDMRFVQKCELRDHLLKHTDYDETRYLHYVDDHDSDSRSPEDWQSRYDNHERSERSQYERNYFRYRSRSRSRDRSRDRSVEERPRDRDRDYEHRTYSRDRYYASERNYDDVREESRDRDYYFVDSEREFKDRERRDRNRDRDRHERDRSYERERSYDRDKDRDYDRKRDYGRDHGDSERDRARSHDRDRDRSRRRDDRSRRSRRDDKDRNYDGDRINSHRDEESQNSSDARGDPDNFRNQPPNNTIMIRGLAQHITENDIRQDIIACNLVPKEIRLIRKRDTGTSRGFAFVEFSTLQEAQHWMEMKQGILMLQDQYRAVMLYSIPKDSSEQSVGSFGTSKDGASSSASDKQKRPSSDWYCIKCAAHNFRRRFCCYRCQTTRKESEEGGNGSNEVSQYATKTVMLRNLDALSTEDSVMAVIKNVANHLVKYIIGVLIGRDPLTSTSRGVCYLDMETTVEALSLHGILKGLSPPLTIDGKEVSVSFCKYRMGDINNMFPQVAFATANTAQTYTMNDLNALADYSASRYAKTPAQYQHYYEYYKQYFAQQIAQGAAITLSDDSQANSVNAAAAVAHAAIQKQRQGKLATDTMLSAPTGSDGKKYPIPDVSTYQYDDTTGYYYDSVTGLYYDATSQYYYNSVIQKYLYWDSSQMTYILAPTQMSAATTATSTPSTVSAPATTAAVIEQSAIETPKTEEKKKIKSEKADKNKVAKKIAKDMERWAKSMNKNKEALRSASSDFNLGGQSNSGSFAASADIGFAVLEKKAAVGSNSGNTLLSQRASAEYSRTNSSNSGTLVAAYGGGSDTSGDEDNSQPAVDLDLIEGLDWNRMICMLCKRQFSSKEALAKHQKVSELHRNNLEQYCQQHGITKEQPIKYRDRAKERRQKFGEADPPAPSKLKEKYLKSLEAAETAASVAASNSLPQVPIGSDNVGSKMLQKMGWSEGQGLGRDNQGRTSIIQAERLVSTAGLGAKSNAYAALPGESYKDCVKKMTYARYQELNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -